Thank you, now it works! Best Francesca
2014-09-08 15:24 GMT+03:00 Douglas Greve <gr...@nmr.mgh.harvard.edu>: > It is not looking for fmc.sm5.DM.lh.nii.gz but rather fmcsm5.nii.gz in > > /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/001 > > does that file exist? Have you run preproc-sess? > doug > > On 8/28/14 9:49 AM, Francesca Strappini wrote: >> Dear all, >> >> I've run selxavg3-sess and I got this error message when it tried to >> read the fmcsm file (fmc.sm5.DM.lh.nii.gz). >> >> Thank you for your help, >> Francesca >> >> >> shalim-ubuntu:/usr/local/freesurfer/fsfast/MeytalRetinotopy> >> selxavg3-sess -a rtopy.DM.lh -s SUBJ01 >> Surface data DM lh >> -------------------------------------------------------------- >> selxavg3-sess logfile is >> /usr/local/freesurfer/fsfast/MeytalRetinotopy/log/selxavg3-sess-bold-rtopy.DM.lh-140828163352.log >> -------------------------------------------------------------- >> ------------------------------------------- >> /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01 >> Thu Aug 28 16:33:53 IDT 2014 >> anadir = >> /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/rtopy.DM.lh >> DoGLMFit = 1 >> DoContrasts = 1 >> UpdateNeeded = 1 >> ------------------------------------------ >> ------- matlab output -------------------- >> No window system found. Java option 'MWT' ignored. >> Warning: Unable to open display 'iconic'. You will not be able to >> display graphics on the screen. >> Warning: No window system found. Java option 'MWT' ignored. >> >> < M A T L A B (R) > >> Copyright 1984-2013 The MathWorks, Inc. >> R2013b (8.2.0.701) 64-bit (glnxa64) >> August 13, 2013 >> >> >> To get started, type one of these: helpwin, helpdesk, or demo. >> For product information, visit www.mathworks.com. >> >> sxa3pwd = >> >> /usr/local/freesurfer/fsfast/MeytalRetinotopy >> >> sxa3cmd = >> >> /usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.DM.lh -s SUBJ01 >> >>>> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m >> #@# SUBJ01 ############################### >> /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01 >> ------------------------- >> $Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m >> /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m >> /usr/local/freesurfer/fsfast/MeytalRetinotopy/MRIread.m >> ------------------------- >> outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopy >> Extension format = nii.gz >> ERROR: cannot determine format of >> /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/001/fmcsm5 >> ERROR: attempting to read >> /usr/local/freesurfer/fsfast/MeytalRetinotopy/SUBJ01/bold/001/fmcsm5 >> ------------------------------------------ >> ERROR: fast_selxavg3() failed\n >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
