You can just copy it over the old one (but make a backup of it first) On 09/09/2014 04:21 PM, Eryilmaz, Huseyin Hamdi wrote: > Hi Doug, > > Thanks for your reply. I can certainly test it. Could you tell me how I can > run this new 'mri_glmfit-sim' you sent me? The original 'mri_glmfit-sim' that > I use is under '/usr/local/freesurfer/stable5_0_0/bin/' > > Best, > Hamdi > > > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Monday, September 08, 2014 11:48 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Monte Carlo Sim output / sig.masked.mgh > > That was an oversight. I've attached a version that should work. Can you > test it for me? Once I know it works I'll check it in to tree. > doug > > > > > On 09/03/2014 12:30 PM, Eryilmaz, Huseyin Hamdi wrote: >> Dear FS experts, >> >> I have a question about a MC output file. When I run the MC sim >> (using mri_glmfit-sim) on the surface, it generates a bunch of files >> including a 'sig.masked.mgh', which is nice for displaying the >> significance map limited to the clusters that survive the MC >> correction. However, when I run it on the volume, it doesn't generate >> this specific file. Does anyone know the reason for that? Is there an >> alternative way to display the significance map that show only the >> clusters that survive the MC correction? >> >> Many thanks! >> Hamdi >> >> >> -- >> >> Hamdi Eryilmaz, PhD >> >> Massachusetts General Hospital >> A.A. Martinos Center for Biomedical Imaging >> Psychiatric Neuroimaging Division >> 149 13th St, Charlestown, MA 02129 >> Phone: +1 617 643 7462 >> Email:heryil...@partners.org <mailto:heryil...@partners.org> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
