Try this chmod -R a+x freesurfer/bin/* On 10/30/2014 06:27 AM, Ali Radaideh wrote: > It does not work. This is really strange > > On Thu, Oct 30, 2014 at 12:53 AM, Z K <zkauf...@nmr.mgh.harvard.edu > <mailto:zkauf...@nmr.mgh.harvard.edu>> wrote: > > I beleive it should have a lower case X, as in: > > chmod -R a+x freesurfer/bin > > -Zeke > > On 10/28/2014 01:19 AM, Ali Radaideh wrote: > > Dear Douglas > > > > Thanks for your reply. unfortunatey I still get the same error. > Here is > > the terminal output. Is there anything else I can do? > > > > -------- freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 -------- > > Setting up environment for FreeSurfer/FS-FAST (and FSL) > > FREESURFER_HOME /usr/local/freesurfer > > FSFAST_HOME /usr/local/freesurfer/fsfast > > FSF_OUTPUT_FORMAT nii.gz > > SUBJECTS_DIR /usr/local/freesurfer/subjects > > MNI_DIR /usr/local/freesurfer/mni > > FSL_DIR /usr/local/fsl > > imaging@imaging-ThinkCentre-23:~$ tcsh > > imaging-ThinkCentre-23:~> tkmedit > > /usr/local/freesurfer/bin/tkmedit: Permission denied. > > imaging-ThinkCentre-23:~> > > > > > > On Mon, Oct 27, 2014 at 5:21 AM, Douglas Greve > > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: > > > > > > Try chmod -R a+X freesurfer/bin > > > > > > On 10/26/14 1:57 PM, Ali Radaideh wrote: > >> Dear FreeSurfer users, > >> > >> I am using freesurfer on 16 PCs (Ubuntu 14.04 64 bit). One of the > >> PCs has the latest version of freesurfer 5.3.0 while the others > >> have the version 5.0.0. The PC that is installed with the latest > >> version freesurfer 5.3.0 does not allow me to run any command and > >> everytime I try a command such such as tkmedit i get the following > >> error > >> /usr/local/freesurfer/bin/tkmedit: permission denied. > >> > >> I have tried to change the permission settings > >> sudo chown -R imaging:imaging freesurfer > >> > >> but did not work. > >> > >> Any ideas why is this happening although I have done the same > >> thing to other PCs and they are working fine. > >> > >> Thanks in advance, > >> Ali > >> > >> -- > >> /Ali M. Al-Radaideh. PhD > >> Assistant Professor > >> Head of Department of Medical Imaging > >> Vice Dean of the Faculty of Allied Health Sciences > >> The Hashemite University, > >> Zarqa, Jordan > >> W.phone +962 5 3903333 ext.5422, 5355, 5364 > >> Email: ali.radai...@hu.edu.jo <mailto:ali.radai...@hu.edu.jo> > <mailto:ali.radai...@hu.edu.jo <mailto:ali.radai...@hu.edu.jo>> > >> / > >> /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/ > >> > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > > you in error > > but does not contain patient information, please contact the sender > > and properly > > dispose of the e-mail. > > > > > > > > > > -- > > /Ali M. Al-Radaideh. PhD > > Assistant Professor > > Head of Department of Medical Imaging > > Vice Dean of the Faculty of Allied Health Sciences > > The Hashemite University, > > Zarqa, Jordan > > W.phone +962 5 3903333 ext.5422, 5355, 5364 > > Email: ali.radai...@hu.edu.jo <mailto:ali.radai...@hu.edu.jo> > <mailto:ali.radai...@hu.edu.jo <mailto:ali.radai...@hu.edu.jo>> > > / > > /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/ > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > -- > /Ali M. Al-Radaideh. PhD > Assistant Professor > Head ofDepartment of Medical Imaging > Vice Dean of the Faculty of Allied Health Sciences > The Hashemite University, > Zarqa, Jordan > W.phone +962 5 3903333 ext.5422, 5355, 5364 > Email: ali.radai...@hu.edu.jo <mailto:ali.radai...@hu.edu.jo> > / > /webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM=/ > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
