Hi, Thanks for asking. Yes, I did run mri_glmfit. However, I was running the simulation on the glm directory provided as a part of the tutorial for this next step, and that was giving the error. When I ran the simulation on the folder created by the mri_glmfit I ran, there is no problem.
Thank you for your time and help! Best, On Thu, Apr 2, 2015 at 2:50 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > Did you run mri_glmfit before that to create lh.gender_age.glmdir ? > > On 04/02/2015 12:08 PM, Özlem Ece Demir wrote: > > Dear all, > > > > I am following the tutorial for group analysis. I successfully ran all > > the steps up until the simulation for clusterwise correction. When I > > attempted to run the mri_glmfit-sim using the following command in the > > tutorial: > > > > mri_glmfit-sim \ > > --glmdir lh.gender_age.glmdir \ > > --cache 4 neg \ > > --cwp 0.05\ > > --2spaces > > > > I receive the following error: > > ERROR: cannot find > > > /autofs/cluster/birn/LEGACY/45/users/BWH/buckner_data/tutorial_subjs/group_analysis_tutorial/glm > > > > Do you know how can I go about addressing this issue? > > Thank you. > > Best regards, > > Ece > > > > -- > > Özlem Ece Demir, Ph.D. > > Research Director > > Language Development Project > > Department of Psychology > > University of Chicago > > 5848 South University Avenue > > Chicago, IL 60637 > > > > Telephone: 773-732-7144 > > Fax: 773-834-5261 > > Email: e...@uchicago.edu <mailto:e...@uchicago.edu> > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Özlem Ece Demir, Ph.D. Research Director Language Development Project Department of Psychology University of Chicago 5848 South University Avenue Chicago, IL 60637 Telephone: 773-732-7144 Fax: 773-834-5261 Email: e...@uchicago.edu
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