Hi Ali, I am also have same subject with you I am a question for you, How van I get recon-all for subject, please help me Thanks a lot Pınar Karadayı
iPhone'umdan gönderildi 23 Ağu 2015 tarihinde 19:42 saatinde, Ali Radaideh <[email protected]> şunları yazdı: > Dear Freesurfer Experts, > > I have finished the recon-all for 30 subjects successfully. However, I > started to get the following error for the remaining subjects (8 subjects) > > mritotal -verbose -debug -clobber -modeldir > /usr/local/freesurfer/mni/bin/../share/mni_autoreg -protocol icbm > transforms/tmp.talairach.6692/src.mnc transforms/talairach.auto.xfm > Can't locate shellwords.pl in @INC (@INC contains: > /usr/local/freesurfer/mni/bin/../lib/mni_autoreg > /usr/local/freesurfer/mni/lib/perl5/5.8.5 /etc/perl > /usr/local/lib/perl/5.18.2 /usr/local/share/perl/5.18.2 /usr/lib/perl5 > /usr/share/perl5 /usr/lib/perl/5.18 /usr/share/perl/5.18 > /usr/local/lib/site_perl .) at /usr/local/freesurfer/mni/bin/mritotal line > 460. > ERROR: mritotal failed, see transforms/talairach.log > Linux imaging-ThinkCentre-16 3.13.0-40-generic #69-Ubuntu SMP Thu Nov 13 > 17:53:56 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux > > recon-all -s Hasan exited with ERRORS at Sun Aug 23 16:27:27 EEST 2015 > > For more details, see the log file > /home/imaging/processing/freesurfer/subjects/14-HASAN_SALAMA/Hasan/scripts/recon-all.log > To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > > Any ideas please. I am in urgent need to process these 8 subjects. > > Thanks in advance, > Ali > > -- > Ali M. Al-Radaideh. PhD > Head of Department of Medical Imaging > Vice Dean of the Faculty of Allied Health Sciences > The Hashemite University, > Zarqa, Jordan > W.phone +962 5 3903333 ext.5422, 5355, 5364 > Email: [email protected] > webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM= > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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_______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
