Hi Ali, Thanks a lot, It helps me a lot. But I wonder a question.I look at ADNI Database There exist also datatable which are "UCSF - Longitudinal FreeSurfer" and "UCSF - Cross-Sectional FreeSurfer" . I want to make early prediction from MCI to AD. Can I use those datatables for my aim and If I use, how can I calculate PBVC values for each subject(person).Thanks
Date: Mon, 24 Aug 2015 15:41:57 +0300 From: [email protected] To: [email protected] Subject: Re: [Freesurfer] mritotal Hi Pınar, Open a terminal change directory to where you have saved you T1 image type setenv SUBJECTS_DIR ${PWD} then start you processing as follows: Step One: recon-all -i (name of T1 image with its extension) -s (name of the subject) example recon-all -i MPRAGE.img -s Ali Step two: recon-all -motioncor -s Ali Step Three: recon-all -autorecon-all -s Ali Hope this helps Ali On Mon, Aug 24, 2015 at 10:35 AM, pınar karadayı <[email protected]> wrote: Hi Ali,I am also have same subject with you I am a question for you, How van I get recon-all for subject, please help meThanks a lotPınar Karadayı iPhone'umdan gönderildi 23 Ağu 2015 tarihinde 19:42 saatinde, Ali Radaideh <[email protected]> şunları yazdı: Dear Freesurfer Experts, I have finished the recon-all for 30 subjects successfully. However, I started to get the following error for the remaining subjects (8 subjects) mritotal -verbose -debug -clobber -modeldir /usr/local/freesurfer/mni/bin/../share/mni_autoreg -protocol icbm transforms/tmp.talairach.6692/src.mnc transforms/talairach.auto.xfmCan't locate shellwords.pl in @INC (@INC contains: /usr/local/freesurfer/mni/bin/../lib/mni_autoreg /usr/local/freesurfer/mni/lib/perl5/5.8.5 /etc/perl /usr/local/lib/perl/5.18.2 /usr/local/share/perl/5.18.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.18 /usr/share/perl/5.18 /usr/local/lib/site_perl .) at /usr/local/freesurfer/mni/bin/mritotal line 460.ERROR: mritotal failed, see transforms/talairach.logLinux imaging-ThinkCentre-16 3.13.0-40-generic #69-Ubuntu SMP Thu Nov 13 17:53:56 UTC 2014 x86_64 x86_64 x86_64 GNU/Linuxrecon-all -s Hasan exited with ERRORS at Sun Aug 23 16:27:27 EEST 2015For more details, see the log file /home/imaging/processing/freesurfer/subjects/14-HASAN_SALAMA/Hasan/scripts/recon-all.logTo report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting Any ideas please. I am in urgent need to process these 8 subjects. Thanks in advance,Ali -- Ali M. Al-Radaideh. PhDHead of Department of Medical ImagingVice Dean of the Faculty of Allied Health SciencesThe Hashemite University, Zarqa, JordanW.phone +962 5 3903333 ext.5422, 5355, 5364Email: [email protected] webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM= _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Ali M. Al-Radaideh. PhDHead of Department of Medical ImagingVice Dean of the Faculty of Allied Health SciencesThe Hashemite University, Zarqa, JordanW.phone +962 5 3903333 ext.5422, 5355, 5364Email: [email protected] webpage: http://staff.hu.edu.jo/Default.aspx?id=ABZUPDzYeqM= _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
