I am using bash. I am trying to google the bash equivalent of tcsh |&, but if anybody knows it, please let me know.
thanks, Susan On Tue, 3 Nov 2015, Douglas N Greve wrote: > I meant &. The & works for tcsh (or csh). Are you using bash? I'm not > sure what the bash equivalent is. Maybe |2 instead of |& > perhaps some bash experts can weigh in > > On 11/03/2015 01:41 PM, s...@u.washington.edu wrote: >> Hi Doug, >> >> Do you mean: >> >> mri_glmfit-sim --debug --glmdir >> /Volumes/Data_Local/ACTWF01_ILD/PrecByLvR_ILD_xsubject/cope7ACroi_rh.osgm.rfx/osgm >> --cache-label AC --grf 4 neg --cwpvalthresh 0.05 --2spaces |7 tee doug.log? >> >> When I tried running the same code with |& tee doug.log at the end, I kept >> getting: >> >> syntax error near unexpected token `&' >> >> Thanks, >> Susan >> >> On Tue, 3 Nov 2015, Douglas N Greve wrote: >> >>> Can you run >>> >>> mri_glmfit-sim --debug --glmdir [my data dir]/cope7ACroi_rh.osgm.rfx/osgm >>> --cache-label AC --grf 4 neg --cwpvalthresh 0.05 --2space |& tee doug.log >>> >>> and send me doug.log? >>> >>> >>> >>> >>> On 11/02/2015 05:08 PM, s...@u.washington.edu wrote: >>>> Hi experts, >>>> >>>> I am having trouble performing a Monte Carlo correction using >>>> mri_glmfit-sim. >>>> >>>> My data were sampled to fsaverage and smoothed at fwhm 5, using >>>> mris_preproc. I then ran mri_glmfit on the data. >>>> >>>> I want to do my analysis/correction only in auditory cortex (AC) so I did >>>> my own simulation in AC of each hemisphere using mri_mcsim (as per >>>> http://freesurfer.net/fswiki/BuildYourOwnMonteCarlo). >>>> >>>> So far, so good. >>>> >>>> But when I try to run: >>>> >>>> mri_glmfit-sim --glmdir [my data dir]/cope7ACroi_rh.osgm.rfx/osgm >>>> --cache-label AC --grf 4 neg --cwpvalthresh 0.05 --2space >>>> >>>> I get "fwhm: Undefined variable." I tried adding --fwhm-override 5, but it >>>> didn't help. >>>> >>>> Any thoughts? Also, can you clarify which comparison neg vs pos will give >>>> me? >>>> >>>> Thank you, >>>> >>>> Susan McLaughlin, PhD >>>> Research Scientist >>>> Laboratory for Auditory Brain Sciences & Neuroengineering >>>> Institute for Learning & Brain Sciences (I-LABS) >>>> Portage Bay Bldg. Room 204 >>>> University of Washington, Box 357988 >>>> Seattle, WA 98195-7988 >>>> >>>> Ph: (206) 616-0102 Fx: (206) 221-6472 >>>> Cell: 206-850-8638 >>>> E-mail: s...@uw.edu >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
