sanlm_IRC04H_00M034_P_1_WIP_T1W_3D_IRCstandard3...
<https://drive.google.com/file/d/0BzdSon_87KLzYl9SMGJIcGcxakE/view?usp=drive_web>
Dear Bruce,
Most of the time the added voxels are included in the orig file but
are lost in the ?h.white one.
Here is the subject file.
Thanks a lot for your help
Antoine
On Mon, May 9, 2016 at 3:42 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
> Hi Antoine
>
> if you upload the entire subject dir we will take a look. It sounds like
> it might be a topological defect. You can check this by seeing if the
> orig.nofix contains the voxels that you added, but the orig does not.
>
> cheers
> Bruce
>
>
> On Mon, 9 May 2016, Saturne Fox wrote:
>
> Dear freesurfer users,
>>
>> I need your help concerning manual segmentation issues.
>>
>> In fact I used the editing tool with an intensity of 250 to add
>> some
>> missing part on the wm.mgz file but some of the added areas were not
>> considered for the creation of the surface.
>>
>> Some of the added parts were only connected through one voxel to
>> the existing parts and I guess that it might have prevented the surface to
>> include these areas but in some other cases the supplementary parts were
>> clear and connected by two or more voxels but were not added.
>>
>> Do you know what are the criteria used by recon-all to determine
>> the surface ?
>> Do you have advices about how to add voxels and be sure that they
>> will be
>> included in the surface?
>>
>> Best regards,
>> Antoine
>>
>>
>> On Mon, May 9, 2016 at 3:25 PM, Saturne Fox <saturne....@gmail.com>
>> wrote:
>> Dear freesurfer users community,
>>
>> I need your help concerning manual segmentation issues.
>>
>>
>>
>>
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