Hello Experts!
I am having trouble checking the registration per step 2 of the pet surfer
tutorial: http://freesurfer.net/fswiki/PetSurfer. The line:
mri_coreg --s subject --mov template.nii.gz --reg template.reg.lta
worked just fine but when checking the registration using the line:
tkregisterfv --mov template.nii.gz --reg template.reg.lta --surfs
I get the following output:
set: Variable name must begin with a letter
As suggested by Dr. Greve, I've attached a text file documenting the input, the
output
and the output with the debug flag on.
Please let me know if I can provide you any further details and I will
get to it as soon as I can.
Thank you very much for your time.
Warmest Regards,
Anderson
/******************************************************************************
Terminal Input
******************************************************************************/
tkregisterfv --mov
/Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN
TOF STATIC 2/2016004A/IM-0001-0001.dcm --reg
/Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN
TOF STATIC 2/2016004A/IM-0001-0001.dcm --surfs
/******************************************************************************
Terminal Output
******************************************************************************/
set: Variable name must begin with a letter
/******************************************************************************
Terminal Output with Debug Flag On
******************************************************************************/
set echo = 1 ;
breaksw
breaksw
end
end
while ( $#argv != 0 )
while ( 5 != 0 )
set flag = $argv[1] ; shift ;
set flag = --mov
shift
switch ( $flag )
switch ( --mov )
if ( $#argv < 1 ) goto arg1err ;
if ( 4 < 1 ) goto arg1err
set movvol = $argv[1] ; shift ;
set movvol =
/Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN
TOF STATIC 2/2016004A/IM-0001-0001.dcm
set: Variable name must begin with a letter.
shift
_______________________________________________
Freesurfer mailing list
[email protected]
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
