In the terminal output it says that your movable volume is
/Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN TOF STATIC 2/2016004A/IM-0001-0001.dcm not template.nii.gz. In principle, that should be fine, except that there are spaces in the path On 01/25/2017 04:34 PM, Anderson Napolitano wrote: > > Hello Experts! > > > I am having trouble checking the registration per step 2 of the pet > surfer tutorial: http://freesurfer.net/fswiki/PetSurfer. The line: > mri_coreg --s subject --mov template.nii.gz --reg template.reg.lta > worked just fine but when checking the registration using the line: > tkregisterfv --mov template.nii.gz --reg template.reg.lta --surfs I > get the following output: set: Variable name must begin with a letter > As suggested by Dr. Greve, I've attached a text file documenting the > input, the output > and the output with the debug flag on. > Please let me know if I can provide you any further details and I will > get to it as soon as I can. > Thank you very much for your time. > Warmest Regards, > Anderson > > > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer /****************************************************************************** Terminal Input ******************************************************************************/ tkregisterfv --mov /Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN TOF STATIC 2/2016004A/IM-0001-0001.dcm --reg /Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN TOF STATIC 2/2016004A/IM-0001-0001.dcm --surfs /****************************************************************************** Terminal Output ******************************************************************************/ set: Variable name must begin with a letter /****************************************************************************** Terminal Output with Debug Flag On ******************************************************************************/ set echo = 1 ; breaksw breaksw end end while ( $#argv != 0 ) while ( 5 != 0 ) set flag = $argv[1] ; shift ; set flag = --mov shift switch ( $flag ) switch ( --mov ) if ( $#argv < 1 ) goto arg1err ; if ( 4 < 1 ) goto arg1err set movvol = $argv[1] ; shift ; set movvol = /Users/djsandoval/Desktop/Selwyn/M87127996-2016004/Baseline/PETCT/PET/PET BRAIN TOF STATIC 2/2016004A/IM-0001-0001.dcm set: Variable name must begin with a letter. shift -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
