can you send the terminal entire output that includes the error?
On 3/9/17 7:57 PM, Limachia, Gaurang (NIH/NINDS) [F] wrote:
Dear Freesurfer Experts,
I want to customize the directory so I can run the following command
mris_preproc --fsgd gender_age.fsgd --cache-in
thickness.fwhm10.fsaverage --target fsaverage --hemi lh --out
lh.gender_age.thickness.10.mgh
However, after running this command it keeps checking in the wrong
directory for the files. How do I change the directory, do I change it
in the FSGD file I made or somewhere else? I ran the recon-all qcache,
but I need to run this on the previously cached data. I would greatly
appreciate it if you can assist me with this problem.
Best Regards,
Gaurang Shyam LImachia
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