Hi Gaurang
you need to send us the full screen output of what you ran. And what do
you mean by "customize"? Did you change the subject dir after running
recon-all?
cheers
Bruce
On Fri, 10 Mar 2017, Limachia, Gaurang (NIH/NINDS) [F] wrote:
Dear Freesurfer Experts,
I want to customize the directory so I can run the following command
mris_preproc --fsgd gender_age.fsgd --cache-in thickness.fwhm10.fsaverage
--target fsaverage --hemi lh --out lh.gender_age.thickness.10.mgh
However, after running this command it keeps checking in the wrong directory
for the files. How do I change the directory, do I change it in the FSGD
file I made or somewhere else? I ran the recon-all qcache, but I need to run
this on the previously cached data. I would greatly appreciate it if you can
assist me with this problem.
Best Regards,
Gaurang Shyam LImachia
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