Hi Sneha
can you include the output as text instead of an image?
thanks
Bruce
On Mon, 7 Aug 2017,
Sneha Pandya wrote:
Hi Bruce,
Please find attached recon-all.log file and I used following command to run the
base:
recon-all -base ped1_base -tp ped1_0 -tp ped1_1 -tp ped1_2 -tp ped1_3 -tp
ped1_4 -all
Following is the screen shot of output showing the error:
[IMAGE]
Thanks,
Sneha
________________________________________________________________________________________________________________________________________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu>
on behalf of Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Sent: Monday, August 7, 2017 1:43:01 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Cortical thickness map for a pediatric case
Hi Sneha
can you send us the commad you ran and the full screen output inluding
the error and also the recon-all.log?
cheers
Bruce
On Mon, 7
Aug 2017, Sneha Pandya wrote:
>
> Dear team,
>
>
> I have completed cross-sectional pipeline on my pediatric case with a
baseline and 4 follow up time points between 4-7 years of age. However, I was not
able
to
> run longitudinal pipeline on it as the base template creation failed with
some topological errors. I assume this failure is due to large eTIV changes within
4-7
> years of age.
>
>
> I wanted to compare cortical thickness map of follow-up time points to its
baseline using qdec. However, I was not able to as running qdec with single subject
> failed with 0 dof error. Can you'll please suggest how can I generate
cortical thickness map between follow-up and baseline scans for this subject if
qdec is
> not an option.
>
>
> Thanks,
>
> Sneha
>
>
>
>
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