Dear Anastasia, I used dicom images to run my subjects, and yes, those freesurfer recons were found in SUBJECTS_DIR in my configuration file. Thanks.
best, Ariel On Mon, Aug 7, 2017 at 2:39 PM, Yendiki, Anastasia <ayend...@mgh.harvard.edu > wrote: > Hi Ariel – Have you run freesurfer on the structural images of your > subjects? Are those freesurfer recons found in what you have defined as > SUBJECTS_DIR in your configuration file? > > Best, > > a.y > > From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Lin, Yizhi" < > l...@union.edu> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Monday, August 7, 2017 at 12:00 AM > To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] TRACULA ERROR!! > > Dear fellow researchers, > > I am running tracula pre-processing step, and the computer showed an error > message: > Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz > Brain mask for output subject: Segmentation fault (core dumped) > Linux Brain 4.2.0-27-generic #32~14.04.1-Ubuntu SMP Fri Jan 22 15:32:26 > UTC 2016 x86_64 x86_64 x86_64 GNU/Linux > > trac-preproc exited with ERRORS at Sun Aug 6 23:37:59 EDT 2017 > > I am sure that I have the aparc+aseg file in the right directory but it > showed that the files are missing..... > > I would be really appreciated if anyone could please help!!! Thanks so > much!!! > > PS: I attached trac-all.log as an attachment. Thanks > > Sincerely, > > Ariel > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
