What do you see when you run: ls /media/brain/brains/TN_retro/Tracula/AN01/mri
________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Lin, Yizhi [l...@union.edu] Sent: Monday, August 07, 2017 3:22 PM To: Freesurfer support list Subject: Re: [Freesurfer] TRACULA ERROR!! Dear Anastasia, I used dicom images to run my subjects, and yes, those freesurfer recons were found in SUBJECTS_DIR in my configuration file. Thanks. best, Ariel On Mon, Aug 7, 2017 at 2:39 PM, Yendiki, Anastasia <ayend...@mgh.harvard.edu<mailto:ayend...@mgh.harvard.edu>> wrote: Hi Ariel – Have you run freesurfer on the structural images of your subjects? Are those freesurfer recons found in what you have defined as SUBJECTS_DIR in your configuration file? Best, a.y From: <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of "Lin, Yizhi" <l...@union.edu<mailto:l...@union.edu>> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Monday, August 7, 2017 at 12:00 AM To: "freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>" <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: [Freesurfer] TRACULA ERROR!! Dear fellow researchers, I am running tracula pre-processing step, and the computer showed an error message: Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: Segmentation fault (core dumped) Linux Brain 4.2.0-27-generic #32~14.04.1-Ubuntu SMP Fri Jan 22 15:32:26 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux trac-preproc exited with ERRORS at Sun Aug 6 23:37:59 EDT 2017 I am sure that I have the aparc+aseg file in the right directory but it showed that the files are missing..... I would be really appreciated if anyone could please help!!! Thanks so much!!! PS: I attached trac-all.log as an attachment. Thanks Sincerely, Ariel _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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