Hi John, Which version of FreeSurfer are you running?
Emma --------- Emma Boyd Research Technician II Laboratory for Computational Neuroimaging Martinos Center for Biomedical Imaging ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Anderson <john.ande...@protonmail.com> Sent: Thursday, August 31, 2017 12:17 PM To: Freesurfer support list Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz Dear experts, looking into the output of Freesurfer in this page https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles I see that there should be a file named "aparc.DKTatlas+aseg.mgz". Is this atlas can be generated with the presence of FLAIR images. When i run recon-all without FLAIR or T2 I don't see this atlas!! Is this atlas FLAIR -based? thank you for any clarification John -------- Original Message -------- Subject: aparc.DKTatlas+aseg.mgz Local Time: August 30, 2017 7:49 PM UTC Time: August 30, 2017 11:49 PM From: john.ande...@protonmail.com To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Dear experts, looking into the output of Freesurfer in this page https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles I see that there should be a file named "aparc.DKTatlas+aseg.mgz". Do I need FLAIR images to get this file. I ran the command recon-all --s subj --all and I can';t find this file thank you for any clarification John
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