I changed the FreeSurfer version to 6 and now i could find it. Thank you! Cheers
On Sat, Sep 16, 2017 at 9:21 PM Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote: > Is it not in $FREESURFER_HOME/bin ? What version are you using? > > On 9/16/17 12:05 PM, Fereshte wrote: > > Well i did ask if it was possible to obtain the volume of Pial surface and > here's the response; > > "sure, mris_volume will give you the interior volume of any closed surface > using the divergence formula. Note that this is *not* the volume of the > ribbon but rather the volume of the entire interior" > > I can't see mris_volume in FreeSurfer commands. > > On Sat, Sep 16, 2017 at 8:09 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > >> sorry, can you clarify what your question is? >> >> On Sat, 16 Sep 2017, Fereshte >> wrote: >> >> > Dear FreeSurfer developers >> > I couldn't find the mentioned mris_volume in the commands. Shall i use >> mri_vol2surf or something? >> > Looking forward to hearing from you! >> > On Tue, Sep 5, 2017 at 9:46 AM Fereshte <fereshte.ramez...@gmail.com> >> wrote: >> > Hi Bruce, >> > Thank you for your replies. >> > Cheers >> > >> > On Tue, Sep 5, 2017 at 4:52 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> > Hi Fereshte >> > >> > the algorithm is documented in the recon1 1999 NeuroImage and >> 2000 PNAS >> > papers >> > >> > cheers >> > Bruce >> > On Mon, 4 Sep 2017, Fereshte wrote: >> > >> > > What's the algorithm used to expand inner cortical boundary ( >> to achieve the >> > outer cortical boundary >> > > in pial surface) in FreeSurfer? >> > > On Mon, Sep 4, 2017 at 9:58 PM Bruce Fischl < >> fis...@nmr.mgh.harvard.edu> wrote: >> > > it will give the interior volume of whatever surface you >> give it as a >> > > command line argument. >> > > >> > > On Mon, 4 Sep 2017, Fereshte >> > > wrote: >> > > >> > > > Using the Pial surface; Does it mean mris_volume will >> give the inner >> > cortical boundary >> > > of the >> > > > surface and not the outer boundary? >> > > > Sincerely, >> > > > Fereshte Ramezani >> > > > On Mon, Sep 4, 2017 at 9:53 PM Fereshte < >> fereshte.ramez...@gmail.com> >> > wrote: >> > > > >> > > > On Mon, Sep 4, 2017 at 6:46 PM Bruce Fischl >> > <fis...@nmr.mgh.harvard.edu> wrote: >> > > > sure, mris_volume will give you the interior >> volume of any closed >> > surface >> > > > using the divergence formula. Note that this is >> *not* the volume >> > of the >> > > > ribbon but rather the volume of the entire >> interior >> > > > >> > > > cheers >> > > > Bruce >> > > > >> > > > >> > > > On Mon, 4 Sep 2017, Fereshte wrote: >> > > > >> > > > > Hello FreeSurfer developersIs it possible to >> have the volume of >> > pial surface >> > > in >> > > > FreeSurfer? >> > > > > >> > > > >_______________________________________________ >> > > > Freesurfer mailing list >> > > > Freesurfer@nmr.mgh.harvard.edu >> > > > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > > >> > > > >> > > > The information in this e-mail is intended only >> for the person to >> > whom it is >> > > > addressed. If you believe this e-mail was sent to >> you in error and >> > the e-mail >> > > > contains patient information, please contact the >> Partners >> > Compliance HelpLine at >> > > > http://www.partners.org/complianceline . 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If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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