Hi Emma Thanks for your reply~
As I am not major in neuroscience, maybe it is quite hard for me to label the image. But thanks a lot and I will try. Would you please help me: 1. The link you provided mentions a new pipeline for infants. Is it integrated with specific infant .gcs atlas file? I am happy as this is what I really want. 2. I provide a new UNC link here(https://www.nitrc.org/projects/pediatricatlas). Can I use these in FreeSurfer? But I find it hard to replace the default one. Thanks for you time again. Best, Lemon ________________________________ Hi Lemon Please see the mailing list archive here for some guidance (the answer is the same for infants): https://www.mail-archive.com/[email protected]/msg56037.html I couldn't see the UNC link you provided. But the basic steps for creating your own atlas are: -label every voxel of the brain in Freeview (for every subject to be used in the atlas) -run mri_ca_train -run rebuild_gca_atlas.csh script in $FREESURFER_HOME/bin Best, Emma --------- Emma Boyd Research Technician II Laboratory for Computational Neuroimaging Martinos Center for Biomedical Imaging ________________________________ From: freesurfer-bounces at nmr.mgh.harvard.edu<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> <freesurfer-bounces at nmr.mgh.harvard.edu<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>> on behalf of li ki <lizhq94 at outlook.com<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>> Sent: Wednesday, December 6, 2017 2:41 AM To: freesurfer at nmr.mgh.harvard.edu<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> Subject: [Freesurfer] Infant Atlas Hi experts, We are presently involved in a project for analyzing MRI data of 1-3 year old children using FreeSurfer. We cannot find a correct infant atlas. From online search, I know that an infant atlas is being developed which will be integrated into FreeSurfer in the future. （link https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4332305/ ） Can I know when this will be available? If not soon, is there any other methods for us to generate an infant(kid) atlas? Also I know there are infant atlas from UNC(http://www.med.unc.edu/bric/ideagroup/free-softwares/unc-infant-0-1-2-atlases), how can I use this atlas in Freesurfer? Best, Lemon -------------- next part -------------- An HTML attachment was scrubbed... URL: http://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/attachments/20171206/665d283b/attachment.html
_______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
