You can use 1021/2021 for calcarine. Or you can use -label lh.V1_exvivo.thresh.label (instead of -seg)
On 02/09/2018 02:18 PM, Sarah Cole wrote: > Dear Dr. Douge, > > I am a little bit confused about creating function ROI in V1. > > Basically, I have some localizers that for some ROIs I need to find > activated neurons in a specific contrast in native space and then > create that ROI and map it to my experimental scans and extract their > voxel data. > > I have used this command for right-FFA: > > funcroi-config -seg aparc+aseg.mgz 2007 -analysis eba-fba.native.rh -c > faces-vs-objects -thresh 3 -sign pos -roi > rh.surface.pSTS.faces-vs-objects.thr3.pos.roicfg -force > > > > But now, for V1 I am not sure what should I use. > > Is this correct? > > > funcroi-config -seg aparc+aseg.mgz 400 -analysis eba-fba.native.rh -c > faces-vs-objects -thresh 3 -sign pos -roi > rh.surface.V1.faces-vs-objects.thr3.pos.roicfg -force > > > > I don't see a number in the lookup table for left and right V1. > > On the other hand, there are V1 labels in the label folder. > > I appreciate your help. > > Thanks > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
