Anastasia, Q: Do the other registration files look like this too? I'm glad you asked. I looked at the .mat files. Two of the mat files have regular numbers. The rest have hex. Also, many of the numbers in these files seem quite huge to me. The two mat files that look normal are anatorig2anat.mat and diff2anatorig.bbr.mat. I put some examples, including both hex and regular, in the attachment. I also put ".dat" and ".dat.sum". Those look normal, too.
Also, Anastasia and Niels, the two most recent we have are fsl-5.0.1 and fsl-5.0.5. I set $FSLDIR to fsl-5.0.1. Once again thanks. John On Thu, Feb 15, 2018 at 6:10 PM, Yendiki, Anastasia < ayend...@mgh.harvard.edu> wrote: > Sorry to hear. Do the other registration files in the dmri/xmfs/ > directory, including diff2anatorig.bbr.mat, look like this too? > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Davis < > jda...@mrn.org> > *Sent:* Thursday, February 15, 2018 4:47:39 PM > *To:* Freesurfer support list > *Subject:* Re: [Freesurfer] Difficulties running tracula > > Anastasia, > I tried your solution. > "setenv LC_NUMERIC en_US.UTF-8" in the shell start up files. > Unfortunately, it didn't work. I did it from both a tcsh and a bash shell. > (local reasons for trying that). Neither worked. The outcome was identical, > but I can send the files in again if you need. > Thank you for helping > John > > On Wed, Feb 14, 2018 at 2:20 PM, Yendiki, Anastasia < > ayend...@mgh.harvard.edu> wrote: > > Hi John – The problem is the funky format of the numbers in that > registration file. It expects a 4x4 matrix of regular decimal numbers. Are > the numbers in all the other registration files in the xfms/ directory in > this same format? It probably has something to do with how your unix > environment variables are set. Try "setenv LC_NUMERIC en_US.UTF-8”. Does > this change the output? > > Best, > a.y > > From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Davis < > jda...@mrn.org> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Monday, February 12, 2018 at 11:20 AM > To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] Difficulties running tracula > > The information you request is in the attachments. Also I sent dmrirc. > > -- > John Davis, PhD > Cell: (520) 907-9769 > jda...@mrn.org > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > > -- > John Davis, PhD > Cell: (520) 907-9769 > jda...@mrn.org > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- John Davis, PhD Cell: (520) 907-9769 jda...@mrn.org
AFewMatFiles.rtf
Description: RTF file
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
