Hi again, The latest version is 5.0.10 but the issue was definitely fixed in 5.0.9 (possibly one point release earlier, I can't recall). Regardless, I don't think there were any changes to flirt between 5.0.9 and 5.0.10.
Good luck! Niels On Fri, Feb 16, 2018 at 5:40 PM, John Davis <jda...@mrn.org> wrote: > Anastasia, > Great - this is awesome (knock on wood). Version 5.0.9 looks stable, but I > should probably ask IT department for the recommended. Is that the latest > stable version? > John > > On Fri, Feb 16, 2018 at 8:56 AM, Yendiki, Anastasia < > ayend...@mgh.harvard.edu> wrote: > >> OK, so the ones that come from bbregister (a freesurfer tool) are fine. >> Then it's possible that this is related to the FSL glitch. It's worth >> trying. Sorry about this, I hope to reduce dependencies in the future. >> ------------------------------ >> *From:* freesurfer-boun...@nmr.mgh.harvard.edu < >> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Davis < >> jda...@mrn.org> >> *Sent:* Friday, February 16, 2018 10:39:35 AM >> >> *To:* Freesurfer support list >> *Subject:* Re: [Freesurfer] Difficulties running tracula >> >> Anastasia, >> Q: Do the other registration files look like this too? >> I'm glad you asked. I looked at the .mat files. Two of the mat files have >> regular numbers. The rest have hex. Also, many of the numbers in these >> files seem quite huge to me. The two mat files that look normal are >> anatorig2anat.mat and diff2anatorig.bbr.mat. I put some examples, including >> both hex and regular, in the attachment. I also put ".dat" and ".dat.sum". >> Those look normal, too. >> >> Also, Anastasia and Niels, the two most recent we have are fsl-5.0.1 and >> fsl-5.0.5. I set $FSLDIR to fsl-5.0.1. >> >> Once again thanks. >> John >> >> On Thu, Feb 15, 2018 at 6:10 PM, Yendiki, Anastasia < >> ayend...@mgh.harvard.edu> wrote: >> >> Sorry to hear. Do the other registration files in the dmri/xmfs/ >> directory, including diff2anatorig.bbr.mat, look like this too? >> ------------------------------ >> *From:* freesurfer-boun...@nmr.mgh.harvard.edu < >> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Davis < >> jda...@mrn.org> >> *Sent:* Thursday, February 15, 2018 4:47:39 PM >> *To:* Freesurfer support list >> *Subject:* Re: [Freesurfer] Difficulties running tracula >> >> Anastasia, >> I tried your solution. >> "setenv LC_NUMERIC en_US.UTF-8" in the shell start up files. >> Unfortunately, it didn't work. I did it from both a tcsh and a bash >> shell. (local reasons for trying that). Neither worked. The outcome was >> identical, but I can send the files in again if you need. >> Thank you for helping >> John >> >> On Wed, Feb 14, 2018 at 2:20 PM, Yendiki, Anastasia < >> ayend...@mgh.harvard.edu> wrote: >> >> Hi John – The problem is the funky format of the numbers in that >> registration file. It expects a 4x4 matrix of regular decimal numbers. Are >> the numbers in all the other registration files in the xfms/ directory in >> this same format? It probably has something to do with how your unix >> environment variables are set. Try "setenv LC_NUMERIC en_US.UTF-8”. Does >> this change the output? >> >> Best, >> a.y >> >> From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Davis < >> jda...@mrn.org> >> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >> Date: Monday, February 12, 2018 at 11:20 AM >> To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> >> Subject: [Freesurfer] Difficulties running tracula >> >> The information you request is in the attachments. Also I sent dmrirc. >> >> -- >> John Davis, PhD >> Cell: (520) 907-9769 >> jda...@mrn.org >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> >> -- >> John Davis, PhD >> Cell: (520) 907-9769 >> jda...@mrn.org >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> >> -- >> John Davis, PhD >> Cell: (520) 907-9769 >> jda...@mrn.org >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > > -- > John Davis, PhD > Cell: (520) 907-9769 > jda...@mrn.org > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
