It looks right. How many subjects do you have? You can also check on the progress by looking at the csd files in the glmdir/csd folder
On 05/03/2018 11:30 AM, std...@virgilio.it wrote: > > Hi list, > > I'm running the follow command lines: > > 1) mri_glmfit --y ces.nii.gz --cortex --surf fsaverage rh --glmdir > MMSE.wls --nii.gz --fsgd g1v1_MMSE.fsgd dods --C intercept.mtx --C > slope.mtx --eres-save > > 2) mri_glmfit-sim --glmdir MMSE.wls --perm 1000 2.0 abs --cwp 0.05 > --bg 1 --3spaces > > the computation N.2 (mri_glmfit-sim) is going ahead from two days... > > ...Poll 16733 job 1 Sun Apr 29 15:58:41 CEST 2018 > > I'm suspecting that some what in command lines is wrong... Please > could you check it? > > Do you think that for my experimental question (I aiming to perform a > within group correlatation between the thickness or FC and MMSE > scores) should I use also PALM within mri_glmfit-sim computation? > > Thanks > > Best regards > > > Stefano > > >> Il 24 aprile 2018 alle 19.39 Douglas Greve <dgr...@mgh.harvard.edu> >> ha scritto: >> >> Try permutation >> >> http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm >> >> >> >> On 4/24/18 8:21 AM, std...@virgilio.it <mailto:std...@virgilio.it> >> wrote: >>> >>> >>> Hi, >>> >>> I'm performing a group analysis. >>> >>> I would like to investigate a simple correlation analysis within >>> group, aiming to map the clusters showing correlation between the FC >>> and the neuropsychological test scores (e.g. MMSE). Overall, the NPS >>> test have not a normal distribution of their scores and, thus, >>> parametric computation should be discouraged. >>> >>> Thanks >>> >>> >>> Stefano >>> >>>> >>>> Il 19 aprile 2018 alle 18.11 "Douglas N. Greve" >>>> <dgr...@mgh.harvard.edu> <mailto:dgr...@mgh.harvard.edu> ha >>>> scritto: >>>> >>>> I'm not sure what you mean. Can you elaborate? Is this an >>>> individual >>>> analysis or a group analysis? >>>> >>>> On 04/18/2018 10:10 AM, std...@virgilio.it >>>> <mailto:std...@virgilio.it> wrote: >>>> > >>>> >>>> Hi list, >>>> >>>> which the best way to perform a whole-brain correlation of >>>> the FC >>>> assessed by FS-FAST with the volumetic or >>>> neuropsychological outcomes? >>>> Please note that my question is specifically addressed to those >>>> factors (neuropsycholgical scores or volume of seed) did >>>> not show a >>>> normal distribution and that cannot be trasformed. >>>> >>>> Thanks >>>> >>>> Kind regards >>>> >>>> Stefano >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> The information in this e-mail is intended only for the person >>>> to whom it is >>>> addressed. If you believe this e-mail was sent to you in error >>>> and the e-mail >>>> contains patient information, please contact the Partners >>>> Compliance HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent >>>> to you in error >>>> but does not contain patient information, please contact the >>>> sender and properly >>>> dispose of the e-mail. >>>> >>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to >>>> whom it is >>>> addressed. If you believe this e-mail was sent to you in error and >>>> the e-mail >>>> contains patient information, please contact the Partners >>>> Compliance HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to >>>> you in error >>>> but does not contain patient information, please contact the sender >>>> and properly >>>> dispose of the e-mail. >>> >>> >> > >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
