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I have about 40 subjects. The last run went ahead for five days. I have killed it. What's do you think about the use of PALM in my study (details are listed in previous mails)? Best regards, Stefano > > Il 7 maggio 2018 alle 19.48 "Douglas N. Greve" <dgr...@mgh.harvard.edu> > ha scritto: > > It looks right. How many subjects do you have? You can also check on the > progress by looking at the csd files in the glmdir/csd folder > > On 05/03/2018 11:30 AM, std...@virgilio.it wrote: > > > > > > > > Hi list, > > > > I'm running the follow command lines: > > > > 1) mri_glmfit --y ces.nii.gz --cortex --surf fsaverage rh --glmdir > > MMSE.wls --nii.gz --fsgd g1v1_MMSE.fsgd dods --C intercept.mtx --C > > slope.mtx --eres-save > > > > 2) mri_glmfit-sim --glmdir MMSE.wls --perm 1000 2.0 abs --cwp 0.05 > > --bg 1 --3spaces > > > > the computation N.2 (mri_glmfit-sim) is going ahead from two days... > > > > ...Poll 16733 job 1 Sun Apr 29 15:58:41 CEST 2018 > > > > I'm suspecting that some what in command lines is wrong... Please > > could you check it? > > > > Do you think that for my experimental question (I aiming to perform > > a > > within group correlatation between the thickness or FC and MMSE > > scores) should I use also PALM within mri_glmfit-sim computation? > > > > Thanks > > > > Best regards > > > > Stefano > > > > > > > > > > Il 24 aprile 2018 alle 19.39 Douglas Greve > > > <dgr...@mgh.harvard.edu> > > > ha scritto: > > > > > > Try permutation > > > > > > > > > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm > > > > > > On 4/24/18 8:21 AM, std...@virgilio.it > > > <mailto:std...@virgilio.it> > > > wrote: > > > > > > > > > > > > > > > > > > > > > > Hi, > > > > > > > > I'm performing a group analysis. > > > > > > > > I would like to investigate a simple correlation > > > > analysis within > > > > group, aiming to map the clusters showing correlation > > > > between the FC > > > > and the neuropsychological test scores (e.g. MMSE). > > > > Overall, the NPS > > > > test have not a normal distribution of their scores > > > > and, thus, > > > > parametric computation should be discouraged. > > > > > > > > Thanks > > > > > > > > Stefano > > > > > > > > > > > > > > > > > > > > > > > > > > > Il 19 aprile 2018 alle 18.11 "Douglas N. Greve" > > > > > <dgr...@mgh.harvard.edu> > > > > > <mailto:dgr...@mgh.harvard.edu> ha > > > > > scritto: > > > > > > > > > > I'm not sure what you mean. Can you elaborate? Is > > > > > this an > > > > > individual > > > > > analysis or a group analysis? > > > > > > > > > > On 04/18/2018 10:10 AM, std...@virgilio.it > > > > > <mailto:std...@virgilio.it> wrote: > > > > > > > > > > > > > > > > Hi list, > > > > > > > > > > which the best way to perform a whole-brain > > > > > correlation of > > > > > the FC > > > > > assessed by FS-FAST with the volumetic or > > > > > neuropsychological outcomes? > > > > > Please note that my question is specifically > > > > > addressed to those > > > > > factors (neuropsycholgical scores or volume of > > > > > seed) did > > > > > not show a > > > > > normal distribution and that cannot be trasformed. > > > > > > > > > > Thanks > > > > > > > > > > Kind regards > > > > > > > > > > Stefano > > > > > > > > > > _______________________________________________ > > > > > Freesurfer mailing list > > > > > Freesurfer@nmr.mgh.harvard.edu > > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > > > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > _______________________________________________ > > > > > Freesurfer mailing list > > > > > Freesurfer@nmr.mgh.harvard.edu > > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > > > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > The information in this e-mail is intended only > > > > > for the person > > > > > to whom it is > > > > > addressed. If you believe this e-mail was sent to > > > > > you in error > > > > > and the e-mail > > > > > contains patient information, please contact the > > > > > Partners > > > > > Compliance HelpLine at > > > > > http://www.partners.org/complianceline . If the > > > > > e-mail was sent > > > > > to you in error > > > > > but does not contain patient information, please > > > > > contact the > > > > > sender and properly > > > > > dispose of the e-mail. > > > > > > > > > > _______________________________________________ > > > > > Freesurfer mailing list > > > > > Freesurfer@nmr.mgh.harvard.edu > > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > > > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > The information in this e-mail is intended only > > > > > for the person to > > > > > whom it is > > > > > addressed. If you believe this e-mail was sent to > > > > > you in error and > > > > > the e-mail > > > > > contains patient information, please contact the > > > > > Partners > > > > > Compliance HelpLine at > > > > > http://www.partners.org/complianceline . If the > > > > > e-mail was sent to > > > > > you in error > > > > > but does not contain patient information, please > > > > > contact the sender > > > > > and properly > > > > > dispose of the e-mail. > > > > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the > > > person to > > > whom it is > > > addressed. If you believe this e-mail was sent to you in > > > error and > > > the e-mail > > > contains patient information, please contact the Partners > > > Compliance > > > HelpLine at > > > http://www.partners.org/complianceline . If the e-mail was > > > sent to > > > you in error > > > but does not contain patient information, please contact the > > > sender > > > and properly > > > dispose of the e-mail. > > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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