It is not clear what the actual error is. Is there anything that gets printed out to the terminal that is not in the log? Also, can you verify that the disk is not filling up?
On 06/04/2018 04:53 PM, Hanna Vasilevskaya wrote: > > > Good afternoon all, > > > I am new to Freesurfer (using version 6.0) and trying to run recon-all > on multiple subjects. Every subject exited with errors. Specifically, > a number of surfaces are missing from the "surf" subject's folder > (only 30 files instead of 80). Would you happen to know how to fix it? > > > Taken from the recon-all status log: > > #@# Smooth2 lh Mon Jun 4 16:26:27 DST 2018 > #@# Smooth2 rh Mon Jun 4 16:26:31 DST 2018 > #@# Inflation2 lh Mon Jun 4 16:26:35 DST 2018 > #@# Inflation2 rh Mon Jun 4 16:27:02 DST 2018 > #@# Curv .H and .K lh Mon Jun 4 16:27:29 DST 2018 > Linux Laptop 4.4.0-43-Microsoft #1-Microsoft Wed Dec 31 14:42:53 PST > 2014 x86_64 x86_64 x86_64 GNU/Linux > recon-all -s 1062_2 exited with ERRORS at Mon Jun 4 16:27:32 DST 2018 > > I have also attached a recon-all.log for your convenience. > > Thank you, > Anna > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
