Hi Abby
it's hard to tell from the image, but it looks like there is a big I/S
bias field as well as large amounts of pathology.
If you upload the subject to our ftp site we will take a look
cheers
Bruce
On Thu, 18 Apr
2019, Abby
tang wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I'm attempting to recon_all my subjects which is .nii file. But I usually meet
this error.
CORRECTING DEFECT 0 (vertices=67, convex hull=73, v0=950)
After retessellation of defect 0 (v0=950), euler #=20 (87340,255044,167724) :
difference with theory
(-32) = -52
CORRECTING DEFECT 1 (vertices=46367, convex hull=8524, v0=962)
Segmentation fault (core dumped)
Linux abby-virtual-machine 4.15.0-47-generic #50-Ubuntu SMP Wed Mar 13 10:44:52
UTC 2019 x86_64 x86_
64 x86_64 GNU/Linux
recon-all -s 2851A_T1_w4 exited with ERRORS at Thu Apr 18 20:25:16 CST 2019
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
I check files in blow command and attached picture.
freeview -v 2851A_T1_w4/mri/norm.mgz -f 2851A_T1_w4/surf/lh.orig.nofix
2851A_T1_w4/surf/lh.inflated.
nofix
almost all of subjects go wrong. I need your help.
please give some advises with program statements in detail.
I really appreciate your help
1) FreeSurfer version: freesurfer-linux-centos7_x86_64-dev.tar.gz
2) Platform: ubuntu 18
3) recon-all.log:see attached
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
