Hi,
When you load brainmask.mgz as the second volume, it will be realigned
to 001.mgz. The default resample method is nearest-neighbor. Thus you
get the blocky look. You can try loading it with trilinear or cubic
resampling like this from the command-line:
freeview -v 001.mgz brainmask.mgz -trilinear
Ruopeng
On 9/16/19 12:41 PM, Alexopoulos, Dimitrios wrote:
External Email - Use Caution
Hi all,
I ran a 2yo subject through FS6.0 using ‘recon-all -i /firstdicom.dcm
-all’ and the output segmentations and surfaces looks good.
Can someone explain why I see different alignments when I view the
001.mgz and brainmask.mgz files in freeview, depending on the order
files are opened.
001.mgz AND brainmask.mgz -- 001 opened first in freeview followed by
brainmask.mgz. Alignemnts OK but brainmask looks grainy.
Brainmask.mgz opened only in a new terminal. Rotated and looks
smoother than brainmask above.
------------------------------------------------------------------------
The materials in this message are private and may contain Protected
Healthcare Information or other information of a sensitive nature. If
you are not the intended recipient, be advised that any unauthorized
use, disclosure, copying or the taking of any action in reliance on
the contents of this information is strictly prohibited. If you have
received this email in error, please immediately notify the sender via
telephone or return mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
