Hi,
When you load brainmask.mgz as the second volume, it will be realigned
to 001.mgz. The default resample method is nearest-neighbor. Thus you
get the blocky look. You can try loading it with trilinear or cubic
resampling like this from the command-line:
freeview -v 001.mgz brainmask.mgz -trilinear
Ruopeng
On 9/16/19 12:41 PM, Alexopoulos, Dimitrios wrote:
External Email - Use Caution
Hi all,
I ran a 2yo subject through FS6.0 using ‘recon-all -i /firstdicom.dcm
-all’ and the output segmentations and surfaces looks good.
Can someone explain why I see different alignments when I view the
001.mgz and brainmask.mgz files in freeview, depending on the order
files are opened.
001.mgz AND brainmask.mgz -- 001 opened first in freeview followed by
brainmask.mgz. Alignemnts OK but brainmask looks grainy.
Brainmask.mgz opened only in a new terminal. Rotated and looks
smoother than brainmask above.
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