What space are they in? Typically, I tell people to run recon-all on the 
mni152 volume, then map labels into that subject, then compute coords

On 9/13/19 3:00 PM, Dev vasu wrote:
>
>         External Email - Use Caution
>
> Dear all,
>
> I would like to obtain MNI coordinates for HCP annotations , i have 
> annotation files for both lh and rh ( which are attached ) , i would 
> like to obtain MNI coordinates for them .
>
> I was going through the post 
> https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2015-November/042446.html
>  
> , but i could not get a better understanding on how to generate MNI 
> values for each label in annot files , that i would like to use for 
> graphical analysis.
>
>
> Thanks
> Vasudev
>
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