External Email - Use Caution I'll note that we don't recommend trying to represent cortical areas in general as single coordinates. We describe the issues with MNI space group average volume alignment in this publication, which illustrates what happens to the HCP's cortical areas using different alignment methods:
https://www.pnas.org/content/115/27/E6356.short Matt. On 9/19/19, 10:09 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D." <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of dgr...@mgh.harvard.edu> wrote: What space are they in? Typically, I tell people to run recon-all on the mni152 volume, then map labels into that subject, then compute coords On 9/13/19 3:00 PM, Dev vasu wrote: > > External Email - Use Caution > > Dear all, > > I would like to obtain MNI coordinates for HCP annotations , i have > annotation files for both lh and rh ( which are attached ) , i would > like to obtain MNI coordinates for them . > > I was going through the post > https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2015-November/042446.html > , but i could not get a better understanding on how to generate MNI > values for each label in annot files , that i would like to use for > graphical analysis. > > > Thanks > Vasudev > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
