External Email - Use Caution Hello Freesurfer developers,
1- I want to extract the uncorrected clusters from the uncorrected significance maps obtained from mri_glmfit for structural data (to illustrate cluster, size, location, and significance) like abs.sig.cluster.summary (summary of clusters (text))which is obtained from mri_glmfit-sim. Is there a way to do this? 2- I don't see any clusters when I use cluster-based correction for multiple comparisons (for example mri_glmfit-sim \ --glmdir lh.Area.glmdir \ --sim mc-z 10000 2 mc-z.abs\ --sim-sign abs --cache 4 neg \ --cwp 0.05\ --2spaces). How much is it significant if I report the uncorrected clusters? 3- Are there new ways of looking at the whole brain together (not left and right hemisphere separately)by Qdec and FSGD? 4- How can I do fdr correction in mri_glmfit-sim? what flag should I use? 5- How can I demean and normalize the covariates when I use FSGD? what flag should I use? Thanks you in advance! Best regards, Hengameh
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