Unfortunately, the log file does not indicate what went wrong. But it
does show that the error happened on the LH (so it is not just RH). Run
the command below and send all terminal output
cd
/home/c1749990/Documents/Analysis/Data/freesurfer/subjects/PPT_001/scripts
mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f
../stats/lh.aparc.DKTatlas40.stats -b -a
../label/lh.aparc.DKTatlas40.annot -c
../label/aparc.annot.DKTatlas40.ctab PPT_001 lh white
On 5/4/2020 1:34 PM, Mason Wells wrote:
External Email - Use Caution
Hi Experts,
I appear to be having some issues with recon-all. I ran the command
from a bash script (see attached), and it appears to work fine for the
left hemisphere as the correct files are in the surf folder. However,
there are no right hemisphere surf files. I have attached the log and
error log for PPT01 and PPT02. Any advice on as to why this has
happened would be great.
Thanks in advance,
Mason
*Mason T Wells, MSc*
*PhD student*
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK
*/Email/*: [email protected] <mailto:[email protected]>
*/Tel/*: 02920 879628
*/Web/*: Cardiff University webpage
<https://www.cardiff.ac.uk/people/research-students/view/974214->
*Mason T Wells, MSc*
*Myfyriwr PhD*
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr
Ysgol Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU
*/E-bost/*: [email protected] <mailto:[email protected]>
*/Ffôn/*: 02920 879628
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