Hi James, Try cd`ing to your home directory, then running:
curl https://raw.githubusercontent.com/freesurfer/freesurfer/fs-7.1/scripts/recon-all > recon-all sudo mv recon-all $FREESURFER_HOME/bin best Andrew From: James Hartzell <[email protected]> Date: Saturday, September 19, 2020 at 10:17 AM To: "Hoopes, Andrew" <[email protected]>, FS Help <[email protected]> Subject: recon-all 7.1.1 External Email - Use Caution Hi Andrew Thanks for the suggestions. I removed freesurfer and reinstalled just 7.1.1. When I try to run the original patch you suggested I still get permissions problems, even with sudo. (base) jameshartzell@Jamess-MacBook-Pro ~ % which freesurfer /Applications/freesurfer/7.1.1/bin/freesurfer (base) jameshartzell@Jamess-MacBook-Pro freesurfer % cd $FREESURFER_HOME/bin (base) jameshartzell@Jamess-MacBook-Pro bin % sudo mv recon-all recon-all.backup Password: (base) jameshartzell@Jamess-MacBook-Pro bin % sudo curl https://raw.githubusercontent.com/freesurfer/freesurfer/fs-7.1/scripts/recon-all > recon-all zsh: permission denied: recon-all Here's hoping you can send another fix! Cheers James -- James Hartzell, PhD (2x) Donostia-San Sebatián, Spain Center for Mind/Brain Sciences (CIMeC), The University of Trento, Italy Center for Buddhist Studies, Columbia University, USA
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