External Email - Use Caution Hi Andrew
Thanks, cool, that looks like it worked. I'll run recon-all, check the logs and QA tools and let you know if I come across any issues. Cheers James On Sat, Sep 19, 2020 at 4:36 PM Hoopes, Andrew <[email protected]> wrote: > Hi James, > > > > Try cd`ing to your home directory, then running: > > > > curl > https://raw.githubusercontent.com/freesurfer/freesurfer/fs-7.1/scripts/recon-all > > recon-all > > sudo mv recon-all $FREESURFER_HOME/bin > > > > best > > Andrew > > > > *From: *James Hartzell <[email protected]> > *Date: *Saturday, September 19, 2020 at 10:17 AM > *To: *"Hoopes, Andrew" <[email protected]>, FS Help < > [email protected]> > *Subject: *recon-all 7.1.1 > > > > * External Email - Use Caution * > > Hi Andrew > > > > Thanks for the suggestions. I removed freesurfer and reinstalled just > 7.1.1. > > When I try to run the original patch you suggested I still get permissions > problems, even with sudo. > > > > (base) jameshartzell@Jamess-MacBook-Pro ~ % which freesurfer > /Applications/freesurfer/7.1.1/bin/freesurfer > > > > (base) jameshartzell@Jamess-MacBook-Pro freesurfer % cd > $FREESURFER_HOME/bin > > > > (base) jameshartzell@Jamess-MacBook-Pro bin % sudo mv recon-all > recon-all.backup > > Password: > > > > (base) jameshartzell@Jamess-MacBook-Pro bin % sudo curl > https://raw.githubusercontent.com/freesurfer/freesurfer/fs-7.1/scripts/recon-all > > recon-all > zsh: permission denied: recon-all > > > > Here's hoping you can send another fix! > > > > Cheers > > James > > > > > > > -- > > James Hartzell, PhD (2x) > > Donostia-San Sebatián, Spain > > Center for Mind/Brain Sciences (CIMeC), The University of Trento, Italy > > Center for Buddhist Studies, Columbia University, USA > > > -- James Hartzell, PhD (2x) Donostia-San Sebatián, Spain Center for Mind/Brain Sciences (CIMeC), The University of Trento, Italy Center for Buddhist Studies, Columbia University, USA
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