Yes, this is a known error that will be fixed in 7.2, thanks for
pointing it out
On 4/9/2021 2:51 AM, Yoonho Hwang wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I'm attempting to compute cortical thickness and to analyze it between
groups.
So I perform "recon-all", but rather than using recon-all -all, some
problems arise while performing each of the steps in it. These
problems are as follwing.
*1. By perform "Curvature Stats" of recon-all in parallel, This
process is required for ?h.curv file. This file is created after
-white or -whitesurf process, but looking at recon-all file in
/usr/local/freesurfer/bin/, -whitesurf is running after this process,
so I think so, Is it correct to move position of curvature stats after
the pialsurf to fix the error?*
*
*
*2. Looking at *MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
<https://secure-web.cisco.com/1GkMeZvnVnQ05ojl-46PZk8Ur4cuLzS11EOrMEhAlenwlbUny-kZmDWjcyVx-ZcTA5SoQ6sEl5NtEzSC_FXto40aFIA0GOzmTqQfZX8gOc5mNg25PWi9Lux1Jcqv6JxnyDHzL_fVXyjzknbCfGS7juCgEcVbikW_ZRJtl0rFZSSo6Qdo5OtLf4coYUOH2rFGX1vhlPnU84VeOk-GnD4XISgM_nAirDwb6d8YkQf-ekkFCKNLgvktMmDurMhZvlP3Qh5udxt-4fxvABhbeIHwXAw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FReconAllDevTable>
and recon-all file, because order of autorecon -all is different
between two reference, I am confused. Can you please tell me which one
to refer to?*
1) FreeSurfer version:
freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551
2) Platform: Ubuntu release 18.04.1
3) uname -a: Linux LABPC 5.4.0-70-generic #78~18.04.1-Ubuntu SMP Sat
Mar 20 14:10:07 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log: see attached
Thank you very much.
Sincerely,
Yoonho
--
*Hwang, Yoonho*
*Medical Image Processing Laboratory (MIPL),*
*Department of Biomedical Engineering, Yonsei University.*
*
*
*#218 Sanhak-Kwan, 1, Yeonsedae-gil, Heungeop-myeon, Wonju,*
*Gangwon-do, 26493, Republic of Korea.*
*
*
*Office: +82-33-760-2499*
*Email: ken.lmsta...@gmail.com <mailto:ken.lmsta...@gmail.com>*
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