Hi! Thanks a lot. I have freesurfer 5.3.0 installed. If I type on the terminal commands such as tkregister it works , but if I try PETsurfer commands I have errors such as "mri_gtmpvc: Command not found”. Any idea?
Thank you, Ludovica > On Nov 3, 2021, at 10:05, Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > > There is nothing special you have to do. What version of FS do you have? You > still have to source the FS environment. If you can run recon-all, you should > be able to run PETsurfer > > On 11/1/2021 12:26 PM, Brusaferri, Ludovica wrote: >> Hi! >> >> I have been using freesurfer regularly and I am now trying to implement a >> few commands from PETsurfer >> https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer >> <https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer>. >> It seems like I cannot use any of the commands listed in the wiki (such as >> gtmseg or mri_coreg), although they should be part of the freesurfer package >> (as PETsurfer is part of freesurfer). Do I need to follow a specific >> pipeline to install the PETsurfer extension? If so, could you please guide >> me through? >> Thanks so much in advance! >> >> Kindly, >> Ludovica >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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