External Email - Use Caution Hi Bruce,
Thanks for your help! I got the label after running mri_annotation2label using the label\lh.aparc.annot file on an individual subject. I always assumed (maybe wrongly) that labels correspond to surfaces and are defined in freesurfer's conformed space. Best regards, Sam On Fri, Jun 3, 2022 at 4:33 PM Fischl, Bruce <bfis...@mgh.harvard.edu> wrote: > Hi Sam > > > > We need more information. What do you mean by “freesurfer space”? Is it on > an individual subject or fsaverage? Volume or surface? How did you create > it? > > > > Cheers > > Bruce > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Sam W > *Sent:* Friday, June 3, 2022 9:12 AM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] labels in anatomical space > > > > * External Email - Use Caution * > > Hello! > > I have a label in freesurfer space, and I would like it to be in > anatomical space. Is this possible? > > Best regards, > > Sam > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1mojxR-1OOXsOtDAMbDKjAngAbJ-L-3Iq09D_j67IIdU99FzF5-mwhdRutXhPvEWcGM-PoS-ynoHNGRKVW8dzr8D48U7yE53HhJvRPQqqxQU0JHfGPg5csHbmFwT80iYnQ7OiqKZec58NE2NidbFwq-6zntJ768fkAyHa9NkJD4_6vI7d31tNwSa0o4Uv5p598KPP21tvgxer7PYlUc0B1Bcr28IG3jqHHMOhMJqPUM0f2mrcebArSOOy4dkDcIz8g6AtFpF-zjQCSw-aI-mQTF1ydPRKlHucGTFqpO6rd7jh9sAVcBAgyQKbiI6SG--NSaT5p0pqGyXe_XawyUQMnw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1QuJFxb7rljcWUxshdW3XryGEdV1eUcbaL8IfprENcCPyVcJFSz8eNhDFoycHCUcqM4fR4xbVgLd8KxmY7Q77TE9t_Cb0cK8PV9DagnMK4Wzh8lu4EZmWYwaXOKfiRgsE_SlDEomWPKifb6BkuVe1OaXqkIGKX2SaPBZdP0ryA-RODRdOp7yqKd4max8i0ygfR4bF1yGclXbAmIwIe0tlgz3dySnHVUWlbosQyUCtTXfPH_JK-CYA7L4Joh09Ti2p7mUeHrAxCNRR7mVE1i244xh1urUyNIHyJ9h6y3r7-FsgoRSQBgF2WttT4oFSp0NO3vWIPsl68MFnU1KW--aK7w/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1QuJFxb7rljcWUxshdW3XryGEdV1eUcbaL8IfprENcCPyVcJFSz8eNhDFoycHCUcqM4fR4xbVgLd8KxmY7Q77TE9t_Cb0cK8PV9DagnMK4Wzh8lu4EZmWYwaXOKfiRgsE_SlDEomWPKifb6BkuVe1OaXqkIGKX2SaPBZdP0ryA-RODRdOp7yqKd4max8i0ygfR4bF1yGclXbAmIwIe0tlgz3dySnHVUWlbosQyUCtTXfPH_JK-CYA7L4Joh09Ti2p7mUeHrAxCNRR7mVE1i244xh1urUyNIHyJ9h6y3r7-FsgoRSQBgF2WttT4oFSp0NO3vWIPsl68MFnU1KW--aK7w/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
