That page is way out of date. Try this one
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultiModal_freeview
On 6/15/2022 5:47 PM, Rachel Wagner wrote:
External Email - Use Caution
Apologies for repeat email – I’m getting the following error message,
is there something I should add?
developer@developer-VirtualBox:~$ mri_convert i.mgz i.img
mri_convert i.mgz i.img
reading from i.mgz...
error: mghRead(/home/developer/i.mgz, -1): could not open file
developer@developer-VirtualBox:~$
*From: *Rachel Wagner <mailto:rwag...@uwo.ca>
*Sent: *June 15, 2022 5:04 PM
*To: *Freesurfer@nmr.mgh.harvard.edu
*Subject: *SPM to FreeSurfer
Hello,
I am trying to take my SPM images and cortically project them with
free surfer (SpmPainting - Free Surfer Wiki (harvard.edu)
<https://secure-web.cisco.com/1T_Lpxp9cC1mW8MHHtVem56Yk4Wt6jHB1_kEXL_UVjWkhtWW5kokRpWuwHmGdye6C0NNpHg7ZADzCWPnd5_7_sU2Y3u6J1-QUHmaJNOZzrS3ig9OuCXhwnb3LYUbElFU8_3dxXYGva1S1NEwrctcFiFdtPgTSJ9hiMx_YH3j__Z4kQKIqD-Q4Ojk86LNUkbR09SF9Nm931fNq1C7Dsv8hNN7P4TMLn2T1qcQbbqYboihhM70a5F4J_iD9xaZdyiPAB9UiTdGTVZtup-RzjNn4iiyNXe712IhsXRsNOf13SImLNRoEeX9zwaS6BOQ8R4hi_cw6ote3pkSLzX317SrnYA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FSpmPainting>.
As it might be quite obvious, I have very little experience using
these softwares.
I am typing in the suggested code as follows:
developer@developer-VirtualBox:~$ mri_convert
$SUBJECTS_DIR/subjectname/mri/brain.mgz brain.img
mri_convert
/usr/local/freesurfer/7.2.0/subjects/subjectname/mri/brain.mgz brain.img
reading from
/usr/local/freesurfer/7.2.0/subjects/subjectname/mri/brain.mgz...
error:
mghRead(/usr/local/freesurfer/7.2.0/subjects/subjectname/mri/brain.mgz,
-1): could not open file
developer@developer-VirtualBox:~$ ^C
developer@developer-VirtualBox:~$
Is there something I am doing incorrectly?
Thank you!
Rachel
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