External Email - Use Caution Dear Bennet, Thank you very much for your help and suggestion. I tried it but it didn't work by indicating the following error "*drodriguez* (the ID that I use to login the computers)* is not in the sudoers file. This incident will be reported. * I think I should consult with my system administrator.
Thanks for your suggestion. Bennet Fauber <ben...@umich.edu>, 15 Şub 2023 Çar, 14:07 tarihinde şunu yazdı: > External Email - Use Caution > > Behçet, > > This message is the key: > > > error while loading shared libraries: libncurses..so.5: cannot open > shared object file: No such file or directory > > FreeSurfer is looking for a supporting library that it expects your > operating system installation to have but that is not there. > > If you can use `sudo` on your system, then you should be able to > install this library with > > $ sudo apt-get install libncurses5 > > If not, then ask your system administrator to install the libncurses5 > package. If that is truly the only problem, installing the missing > ncurses library should fix it. > > > > On Wed, Feb 15, 2023 at 7:59 AM behçet ayyıldız > <behcetayyild...@gmail.com> wrote: > > > > External Email - Use Caution > > > > Hello, > > Thank you for your valuable reply. I would ask something before checking > it. I forgot to say something, even after the computers change "recon-all" > is running, just like it runs before the change, however not the > segmentThalamicNuclei.sh command. So yeah, I would also say that the > problem is only in the segmentation module of Freesurfer for now. > > Thanks in advance, > > > > fsbuild <fsbu...@contbay.com>, 15 Şub 2023 Çar, 13:07 tarihinde şunu > yazdı: > >> > >> > >> Hello Behçet, > >> > >> Are you saying the version of the Ubuntu operating system changed and > now when you run the same command you get this error about the missing > library ? > >> > >> If so, I would check with your system administrators to see if they > have installed the freesurfer 7.1.1 .deb freesurfer package from > MailScanner has detected a possible fraud attempt from " > secure-web.cisco.com" claiming to be > https://secure-web.cisco.com/1At8QKM5oUsIZmRsMRNPvhsQysuzVxU0In_cXK4XC9XLDrZ2r6sikCaL04qUDeq4YTnI3kbGV1BNXabGmY6xVJPR-e2I6MBfY-Vu6XHXP47iONvWVDgj8omQSxs7G5hEqYpNRd5h-SckFyCXvMy6QwWt0jxjI5ksAmJcq1k5ekzokLxXD2dPiff-Fbb71fDecSXCWQki6snsMxWyQhz9FD5vmREC907pYwpxGrF3gECDvLhUXe9YE_4uOQrQiB6kElEQRo-XN1n1ygcx2tqJ2udXwaGWQYoO2FZitUhv1kYXCd0RC_jn7jgplRcBU_En0X-llJ6JzOQVLDj1ff4BtKA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Frel7downloads > which matches the version of Ubuntu you are now running.. Running the > installer package should try to fix that missing library dependency. > >> > >> - R. > >> > >> On Feb 15, 2023, at 05:36, behçet ayyıldız <behcetayyild...@gmail.com> > wrote: > >> > >> External Email - Use Caution > >> > >> > >> Dear All, > >> I was using Linux Ubuntu to perform my analysis. However, they were > changed with Linux ..... a couple of days ago. And while the > segmentThalamicNuclei.sh command was running before the change, after the > change it didn't run and I got the following message. > >> > >> > >> drodriguez@causal:/data_august/Daniela/Behcet/Freesurfer_pulvinar_OCD$ > segmentThalamicNuclei.sh con_HaJa93 > >> Setting ITK threads to 1 > >> #-------------------------------------------- > >> #@# Thalamic Nuclei processing Wed 15 Feb 2023 11:09:10 AM CET > >> ------------------------------------------ > >> Setting up environment variables > >> --- > >> LD_LIBRARY_PATH is > ..:/sw/freesurfer/7.1.1//MCRv84//runtime/glnxa64:/sw/freesurfer/7.1.1//MCRv84//bin/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/os/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/sw/freesurfer/7..1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64: > >> /sw/freesurfer/7.1.1//bin/SegmentThalamicNuclei: error while loading > shared libraries: libncurses..so.5: cannot open shared object file: No such > file or directory > >> 127 > >> Linux causal.brain.mri.tu-muenchen.de 5.10.0-21-amd64 #1 SMP Debian > 5.10.162-1 (2023-01-21) x86_64 GNU/Linux > >> > >> Do you guys have any idea how to fix it ? > >> > >> Thanks in advance. > >> > >> -- > >> > >> Behçet Ayyıldız.. > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> MailScanner has detected a possible fraud attempt from " > secure-web.cisco.com" claiming to be > https://secure-web.cisco.com/1C2qT0kjSdOsO4Urhs8YV1g41i7E88v5A13FUDYy7LmlSF2EiRbuT9gvgVLFnERelVG7_YRTnwqm0aXquB-vbmJ0jQAxSOTe8uQyFN_P8ZL1FwAFmhQ8FfLjY3Z5HTT-HZfbruZjUbDfH5fkjSchgybsVsgQwgfAxATRkNUwCqRksjrUUh8wBE4CJj8DQDm45HtuhuXqDun2aXI-UcJwyYkVHt4PVNsRQHNDiVhBOTSN6bvp28B7EiOm3mheAspAgjxXwS71tqnTYhrR88RP87ovsHucfO-sn26KZ23WDaP_GEnfP8f-LDa-HmtzJQlieoYJhxj9F7fbm26glFDKxPA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > >> > >> > > > > > > -- > > > > Behçet Ayyıldız.. > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > https://secure-web.cisco.com/1C2qT0kjSdOsO4Urhs8YV1g41i7E88v5A13FUDYy7LmlSF2EiRbuT9gvgVLFnERelVG7_YRTnwqm0aXquB-vbmJ0jQAxSOTe8uQyFN_P8ZL1FwAFmhQ8FfLjY3Z5HTT-HZfbruZjUbDfH5fkjSchgybsVsgQwgfAxATRkNUwCqRksjrUUh8wBE4CJj8DQDm45HtuhuXqDun2aXI-UcJwyYkVHt4PVNsRQHNDiVhBOTSN6bvp28B7EiOm3mheAspAgjxXwS71tqnTYhrR88RP87ovsHucfO-sn26KZ23WDaP_GEnfP8f-LDa-HmtzJQlieoYJhxj9F7fbm26glFDKxPA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > The information in this e-mail is intended only for the person to whom > it is addressed. If you believe this e-mail was sent to you in error and > the e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1ud1ykrOdc9YoV_4X5XaFkvrONTcVWrgb6UukmZdfefvZ1kBvYdGCkPoccOy0KuB6ZQRB7QeHYqUF7j-PEfS51jsF2zr5_HJDVLbyZw3XZV21fsqms4lW5K-PbuIWyWmHx37bw3hRujUdFCnaiMl2V8CMPdGTc4mamGSFmzbv8ziVR3sc3KKNgxfprd4Q6E6trvLYS-0G9oLWeSdgp0Jz0lr7Yh1VMH57UKfL9rEm4Hl0-cf_VoYqgs-_euIA_YVPON9Q32qsgIBjcvj27Ls0zmRFHRxyt7vQU9hhweB93_KaXU6PEWFM4gVhQU2f2__ZZfKBOk5Ye41HQOmPUHh4hg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1ud1ykrOdc9YoV_4X5XaFkvrONTcVWrgb6UukmZdfefvZ1kBvYdGCkPoccOy0KuB6ZQRB7QeHYqUF7j-PEfS51jsF2zr5_HJDVLbyZw3XZV21fsqms4lW5K-PbuIWyWmHx37bw3hRujUdFCnaiMl2V8CMPdGTc4mamGSFmzbv8ziVR3sc3KKNgxfprd4Q6E6trvLYS-0G9oLWeSdgp0Jz0lr7Yh1VMH57UKfL9rEm4Hl0-cf_VoYqgs-_euIA_YVPON9Q32qsgIBjcvj27Ls0zmRFHRxyt7vQU9hhweB93_KaXU6PEWFM4gVhQU2f2__ZZfKBOk5Ye41HQOmPUHh4hg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1w00bCIy2TE8rC547yu6Ol46KDEv2_z_clcovEOMNz9zkBJVD28LCDAFORuktsswdrxzQ_Ap9MTMpDkJMaMNzSKxYR-mFlb63LniCa94_Xn6peFnhDvckKrT2SYXy7Jlja2FbUnH89yMe_FeozcdV3UxZF4IAGU8ee9VSlp5LEJDDgSGDXuca9ZuoDiBHBZLGHhjCvBMbnC-rj2bk17lC6LLteuWN9pkLtZz1qqNeEhSsTwoWhXi0zg9mqP4zyeNYp5s32i8RI-8uOWnncmna54_YVTTXuXgW2wpls2vx0lD5ukOPTj1HzPZgbe-1l-HzrpUo_DMGy1Emz0dcHpzpFA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1pvIj_4U6TliLDIHaDxH03jRF17SrSpMmkwRPWiIZfjxQciSqGZWF0BSc-3gpKvvg0pgEsN8bL6fgnNNiTHmfLQAjyq7iXeHGhJtVh8_VZ9m4xPvkxdtJ7MU6L8uPrJJv2qZWCwb7ejkAtzsNlqNdXmdsHii5Oakl2maqVwP5KCB63Fxo0TMTHzjbxOXSoSf0FQp6NwM_nWM2iKKrepxN-8a1B1lfDSd3I2knfZLVSJivk0UBDS6HHJt1YZtQsJZwPbqztZ1eJammqWeOSgSeHCl4sCS2JcQJc1EDV1RoXhjYCxeXOa5r2vS0kb4deKDUaFosBOrVsAaKXehIGhJDng/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1pvIj_4U6TliLDIHaDxH03jRF17SrSpMmkwRPWiIZfjxQciSqGZWF0BSc-3gpKvvg0pgEsN8bL6fgnNNiTHmfLQAjyq7iXeHGhJtVh8_VZ9m4xPvkxdtJ7MU6L8uPrJJv2qZWCwb7ejkAtzsNlqNdXmdsHii5Oakl2maqVwP5KCB63Fxo0TMTHzjbxOXSoSf0FQp6NwM_nWM2iKKrepxN-8a1B1lfDSd3I2knfZLVSJivk0UBDS6HHJt1YZtQsJZwPbqztZ1eJammqWeOSgSeHCl4sCS2JcQJc1EDV1RoXhjYCxeXOa5r2vS0kb4deKDUaFosBOrVsAaKXehIGhJDng/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > -- *Behçet Ayyıldız..*
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
