External Email - Use Caution Dear All, Thank you very much for your interest. I contacted my system administrator and he fixed it.
fsbuild <fsbu...@contbay.com>, 22 Şub 2023 Çar, 18:04 tarihinde şunu yazdı: > > The best solution (which I think was previously emailed to you) is to have > an admin/IT person update your system by doing the following: > > 1) Copy the link for the freesurfer release install package matching your > Ubuntu system, e.g., 7.3.2 freesurfer release on Ubuntu 18, 20, 22, from > https://secure-web.cisco.com/17odrIaeqqXyCFNMITUZLWCsV1nDLwcZvIwAdFfrCgZstaX3KcShsxwtd1nV_0neGCljJYRyrmXB_9FYYWlvzi0aAOKF6-IgKzdLVnoXlPzWf-aVUWxsLEcxHHagKtcYlTSzSaYMEniOiZ9-011NkqMYAmxTbdvalw_Bz9ZkraztvTZRL3LvDUHmsXbxeTCZKy_m1TW09Rd1FMb8MhEzG7sqZ9V5OZBS4HP_DAXX0oTCpyFY8RNIo1COpOW9mVc5vwmYBzSzqyq4nnbGh2OYCHkw3wTT6wskllFFKVAf5rxhJJLBi181Gj0OBWi_ItifA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Frel7downloads > > 2) Download and install it with, > > $ wget <link copied from the web page above> > .... say wget downloaded the file freesurfer_ubuntu18-7.3.2_amd64.deb .... > $ sudo apt-get install ./freesurfer_ubuntu18-7.3.2_amd64.deb > > That should install libncurses and anything else that's needed > automatically. Trying to piecemeal run commands to install individual > system packages like libncurses is asking for more trouble. > > - R. > > On 2/22/23 10:54, Iglesias Gonzalez, Juan E. ( > jiglesiasgonza...@mgh.harvard.edu) wrote: > > Thanks for the interest in our software! > > Could you please try running this command from the terminal? > > sudo apt-get install libncurses5 > > Cheers, > > /Eugenio > > -- > > Juan Eugenio Iglesias > > http://secure-web.cisco.com/1CD4UMye_OW85IfsE6bQBrNtvpWyCJy2BhTyu2MIEBR_-FzT4qnEOIvuv60AJod7OwbUow5sN8KBnBocp8nrsNl0y1lbMWwxmyTtIn-uTzPbWgYozeNdWRX52yjCNa_DCtcCsXcyetP3rR93lWBi2HU9ML3fLK5AeoZk-2zljmNU0uT3ATORLN2xlu_95yv8lDRlPgueBO5vpLNngwCeC48BsGs7jJDHjJDVbaXiJSl9gtf8WK0qEvAjayRCzl5LcjwgSzWTQM5o-HHB-TEMgWnc2uT3zGYvFuNnFIMnv3LApUMzDvcfFpAeCr-qPthrU/http%3A%2F%2Fwww.jeiglesias.com > > > > *From: *<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of behçet > ayyıldız <behcetayyild...@gmail.com> > *Reply-To: *Freesurfer support list <Freesurfer@nmr.mgh.harvard.edu> > *Date: *Wednesday, February 15, 2023 at 05:36 > *To: *"Freesurfer@nmr.mgh.harvard.edu" <Freesurfer@nmr.mgh.harvard.edu> > *Subject: *[Freesurfer] segmenThalamicNuclei.sh exited with ERRORS > > > > * External Email - Use Caution * > > Dear All, > > I was using Linux Ubuntu to perform my analysis. However, they were > changed with Linux ..... a couple of days ago. And while the > segmentThalamicNuclei.sh command was running before the change, after the > change it didn't run and I got the following message. > > > > > > drodriguez@causal:/data_august/Daniela/Behcet/Freesurfer_pulvinar_OCD$ > segmentThalamicNuclei.sh con_HaJa93 > > Setting ITK threads to 1 > > #-------------------------------------------- > > #@# Thalamic Nuclei processing Wed 15 Feb 2023 11:09:10 AM CET > > ------------------------------------------ > > Setting up environment variables > > --- > > LD_LIBRARY_PATH is > ..:/sw/freesurfer/7.1.1//MCRv84//runtime/glnxa64:/sw/freesurfer/7.1.1//MCRv84//bin/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/os/glnxa64:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/sw/freesurfer/7.1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/sw/freesurfer/7..1.1//MCRv84//sys/java/jre/glnxa64/jre/lib/amd64: > > /sw/freesurfer/7.1.1//bin/SegmentThalamicNuclei: error while loading > shared libraries: libncurses.so.5: cannot open shared object file: No such > file or directory > > 127 > > Linux causal.brain.mri.tu-muenchen.de > <http://secure-web.cisco.com/1Q7u7_P_NBkc_6lPG6bKTBeKKKlGXijIY3WOh-az_lej5ouUAxdtd4EmKT_u9Ta4ud8eMwDHlMpBMhNFLQGw8LWF4sEDJlyH6Muh82TsilCRK1ngCD8sjyG-bAu8CT6GY9MyisYmh9yQuNzToAjWnufnO_vOtzf99VuFt0fshgezuEzCh7ol77iCiTtL-r6g3DBhNXWLP_G9X0qe-imQVFcZecK19skmK2_yLx7sH-K6ro7bRrWRzE3teegonbBQVv6CgdfZbtEQB51-157E3hXTYNBhNfuMoLwk1ExcuA4yRb2ATsBgCSvv-JLWOJuv_03h2XiPIQvfiWSc1jUKDtA/http%3A%2F%2Fcausal.brain.mri.tu-muenchen.de> > 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux > > > > Do you guys have any idea how to fix it ? > > > > Thanks in advance. > > > > -- > > *Behçet Ayyıldız..* > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General Brigham > Compliance HelpLine at > https://secure-web.cisco.com/1Ts5tzBaQlREVbZWVht67O8h5VNhtnrIdg0jAwpXzx12U9A5GRRsjm8ZeuyDUwXFCXpXnjwco6PuckG9bh8oM4FAORtqRVXN_iaDB4PEEeRQOFL6erUxBEw1JkaB-8k-mkXwHNDeVkoM4BCN1Yxn6h1CA4qbh72cxbEuZ7InnqoSUBl6G-FtXeY4Uz8KbP8GmLImpAGmycUk0aRa1zmy_igFdmhBnkmEZb3ZTSSD_krKodw34YOA2sFNf5EHb-J0TMjpDGJc8eByc1IJDkT3zOTuBTrnyvlbxRWoac5TTiINiQhNVEgnh2bzWR_-fmqLc/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > > <https://secure-web.cisco.com/1Ts5tzBaQlREVbZWVht67O8h5VNhtnrIdg0jAwpXzx12U9A5GRRsjm8ZeuyDUwXFCXpXnjwco6PuckG9bh8oM4FAORtqRVXN_iaDB4PEEeRQOFL6erUxBEw1JkaB-8k-mkXwHNDeVkoM4BCN1Yxn6h1CA4qbh72cxbEuZ7InnqoSUBl6G-FtXeY4Uz8KbP8GmLImpAGmycUk0aRa1zmy_igFdmhBnkmEZb3ZTSSD_krKodw34YOA2sFNf5EHb-J0TMjpDGJc8eByc1IJDkT3zOTuBTrnyvlbxRWoac5TTiINiQhNVEgnh2bzWR_-fmqLc/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not wish > to continue communication over unencrypted e-mail, please notify the sender > of this message immediately. Continuing to send or respond to e-mail after > receiving this message means you understand and accept this risk and wish to > continue to communicate over unencrypted e-mail. > > > -- *Behçet Ayyıldız..*
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