External Email - Use Caution
Dear all,
Could anyone provide an update as to whether there is a way to incorporate
manual edits into the infant Freesurfer pipeline?
Thank you,
Jee Won
-----Original Message-----
------------------------------
Date: Thu, 16 Feb 2023 13:38:44 +0000
From: "Kang, Jee Won" <jeewon.k...@childrens.harvard.edu>
Subject: Re: [Freesurfer] Infant Freesurfer - manual edits
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Message-ID:
<dm8pr16mb452084e15cf083820be8e5f2a5...@dm8pr16mb4520.namprd16.prod.outlook.com>
Content-Type: text/plain; charset="iso-8859-1"
External Email - Use Caution
Dear Freesurfer experts,
Hello, I have started experimenting with Infant Freesurfer (version 4a14499),
and we have run into a problem with very poor segmentation of the thalamus in
one of our subjects.
Is there a way to incorporate manual edits, as in adult Freesurfer, to improve
the segmentation? From this post:
https://secure-web.cisco.com/17dOvwIxNLzp7uy4sPSZtQcx10XecPwg7CgGSbSZM5j-YwZg1zBBCSzTMX-f7kzJheChbEnEcuUkYkB0BTVHm-xfRUhpzCX_TlsHbEdhGUH2gn0_nn1tmQpouRISZA9QRXaD3l3eQ1kIWuy2uUABxySUFiS4_qEzJtjIcwjyvMh8ZtTOn8xcW5DTC2nm0Ae87JZJlms41WbSoy6Z_ayhRcK7i7lzhi-4sHDOVOkmdF1tRE-L5MWw57oPO2Arwrz6jCrNRJO_N9BgWx-x8UXyqb71Z790ORylIu85GupJMjdQxZ657VrIAgHkKYj2RXULKeekubla44vFSi51p1r5hag/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg65925.html
it looks like the option to make manual edits was a feature in the works, but
I am not sure if that is still the case.
I am guessing it would be inadvisable to re-run the infant data after making
edits (to wm or aseg.presurf) in adult Freesurfer?
Thank you for your advice on this!
Sincerely,
Jee Won
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
