Dear Robert, Sorry for the slow response. Yes, it should be fine. Cheers, /Eugenio
-- Juan Eugenio Iglesias http://www.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Toms, Robert <robert.t...@utdallas.edu> Date: Monday, May 5, 2025 at 1:00 PM To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] SegmentSubfieldsT1Longitudinal Error, Line 2136 -- Are disorganized volumes usable? External Email - Use Caution (please see below) ________________________________ From: Toms, Robert Sent: Monday, May 5, 2025 2:55 PM To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Subject: SegmentSubfieldsT1Longitudinal Error, Line 2136 -- Are disorganized volumes usable? Dear Experts, I'm having the same error as this 2023 post that y'all responded to: https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg74833.html<https://secure-web.cisco.com/15Vt3zMobf7Y4tHpCjLxvyPhoC2gjNR1_ZY3GyZjqm3L4sTIpRNxmYobtpX8i9ixxWYSwuCiHkfWl7Taj_Qcjd5hwAH_rJA8UMd3bEzs87cjEQD1QiiaHA1aBbUEamu_jQ76ce_5wbkfCOeDKGX92oQb0UuBBPILreVMRcdZFFRSX2V6kvuG6F1ElzZooIk-mZUblmT3x5Hs73aSc3NYssK7rUSmWFIxrvJpQPO3M2nbqIZaaA2jtn7dl-QOr0zh437aPYtD7KmRyEi8aihdyfZUJXHrP5gPZfjjV7IFZ5DCLwYFPmh889djjddsR6ORv0CM13ZKyHRaa2QczU0MJAg/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg74833.html> I'm running FreeSurfer 8.0.0 on Ubuntu 22.04.5 LTS, and most of my subjects have run through the whole pipeline with no problems. You told the original 2023 poster that the 2 timepoint volumes are disorganized, but still usable—which was very helpful, and covers most of my error cases, however two of my errored-out subjects have 3 timepoints. I wanted to check with you in case 3-timepoint volumes wouldn't be usable for some reason? The following volumes are in base/tmp/hippoSF_T1_long.v22_right/ : volumesAmygdala_tp_1.txt volumesAmygdala_tp_2.txt volumesAmygdala_tp_3.txt volumesHippo_tp_1.txt volumesHippo_tp_2.txt volumesHippo_tp_3.txt I've attached the logs for both of them, and the final lines of both logs are identical: Applying LTAtransformInterp (resample_type 0) writing to discreteLabelsMergedBodyHeadNoMLorGCDGResampledT1_tp_2.mgz... Transforming points Transforming points Wrote image to file image_tp_3.mgz This file does not contain MRI parameters Unable to perform assignment because the left and right sides have a different number of elements. Error in SegmentSubfieldsT1Longitudinal (line 2136) Thank you! Robert
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
