I've successfully installed bx-python, and there are mountain of utility 
scripts.  Which ones do you use for converting the quals.fa file to binned 
array format?

David

On Feb 1, 2011, at 2:50 PM, Guru Ananda wrote:

> Hi David,
> 
> We download quality score files (qual.fa) from UCSC and convert them to 
> binned array format using scripts from bx-python 
> (https://bitbucket.org/james_taylor/bx-python/wiki/Home) to enable fast seek. 
> If you interested in the particulars (which script etc.), please let me know 
> and I can provide you with the details.
> 
> Thanks,
> Guru.
> 
> On Tue, Feb 1, 2011 at 1:23 PM, David Hoover <hoove...@helix.nih.gov> wrote:
> Where do the files in quality_scores.loc come from?  Can they be downloaded 
> from UCSC or somewhere else?
> 
> David Hoover
> Helix Systems Staff
> http://helix.nih.gov
> _______________________________________________
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> http://lists.bx.psu.edu/listinfo/galaxy-dev
> 
> 
> 
> -- 
> Graduate student, Bioinformatics and Genomics
> Makova lab/Galaxy team
> 505 Wartik lab
> University Park PA 16802
> g...@psu.edu
> 

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