I've successfully installed bx-python, and there are mountain of utility scripts. Which ones do you use for converting the quals.fa file to binned array format?
David On Feb 1, 2011, at 2:50 PM, Guru Ananda wrote: > Hi David, > > We download quality score files (qual.fa) from UCSC and convert them to > binned array format using scripts from bx-python > (https://bitbucket.org/james_taylor/bx-python/wiki/Home) to enable fast seek. > If you interested in the particulars (which script etc.), please let me know > and I can provide you with the details. > > Thanks, > Guru. > > On Tue, Feb 1, 2011 at 1:23 PM, David Hoover <[email protected]> wrote: > Where do the files in quality_scores.loc come from? Can they be downloaded > from UCSC or somewhere else? > > David Hoover > Helix Systems Staff > http://helix.nih.gov > _______________________________________________ > galaxy-dev mailing list > [email protected] > http://lists.bx.psu.edu/listinfo/galaxy-dev > > > > -- > Graduate student, Bioinformatics and Genomics > Makova lab/Galaxy team > 505 Wartik lab > University Park PA 16802 > [email protected] >
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