I have figured out how to send data from my local Galaxy to my local 
GBrowse. Thanks for the help! 

Now I would also like to go in the other direction and send data from 
GBrowse to Galaxy.

galaxy incoming = http://localhost/cgi-bin/gbrowse

When I export data to Galaxy I get the main page of galaxy but do not see 
any data.
The url in my browser is 

Any ideas as to why I can't see the actual data? Shoudn't the url contain 

Thanks for your help,

Nicki Gray <nicki.g...@imm.ox.ac.uk>
Liisa Koski <liisa.ko...@dnalandmarks.ca>
"galaxy-dev@lists.bx.psu.edu" <galaxy-dev@lists.bx.psu.edu>
2011-02-10 11:40
Re: [galaxy-dev] Send data to GBrowse

Hi Liisa

When setting this up on our own local instance to get bigwig files to 
display in Gbrowse we edited:

1. universe_wsgi.ini
2. tool-data/shared/gbrowse/gbrowse_build_sites.txt
3.  datatypes_conf.xml

so that it includes

<display file="gbrowse/gbrowse_wig.xml" />

4. and in display_applications/gbrowse/ make sure you have the relevant 
xml files

eg gbrowse_wig.xml, gbrowse_bigwig.xml

Nicki Gray
MRC Molecular Haematology Unit

On 7 Feb 2011, at 19:03, Liisa Koski wrote:

I have just installed Galaxy and am trying to configure it to allow 
display of data on my local installation of GBrowse. 

I have edited tool-data/shared/gbrowse/gbrowse_build_sites.txt (species 
http://domain.ca/cgi-bin/gbrowse/species   species) 
As well as universe_wsgi.ini (gbrowse_display_sites = species) 

However I do not see a link in history items after I stop and start the 

Is there something else I'm missing? 

Thanks in advance for your help, 

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