I have figured out how to send data from my local Galaxy to my local GBrowse. Thanks for the help!
Now I would also like to go in the other direction and send data from GBrowse to Galaxy. galaxy incoming = http://localhost/cgi-bin/gbrowse When I export data to Galaxy I get the main page of galaxy but do not see any data. The url in my browser is http://localhost:8080/?URL=http://localhost/cgi-bin/gbrowse Any ideas as to why I can't see the actual data? Shoudn't the url contain ref;start;end;type? Thanks for your help, Liisa From: Nicki Gray <nicki.g...@imm.ox.ac.uk> To: Liisa Koski <liisa.ko...@dnalandmarks.ca> Cc: "galaxy-dev@lists.bx.psu.edu" <galaxy-dev@lists.bx.psu.edu> Date: 2011-02-10 11:40 Subject: Re: [galaxy-dev] Send data to GBrowse Hi Liisa When setting this up on our own local instance to get bigwig files to display in Gbrowse we edited: 1. universe_wsgi.ini 2. tool-data/shared/gbrowse/gbrowse_build_sites.txt 3. datatypes_conf.xml so that it includes <display file="gbrowse/gbrowse_wig.xml" /> 4. and in display_applications/gbrowse/ make sure you have the relevant xml files eg gbrowse_wig.xml, gbrowse_bigwig.xml Nicki Gray MRC Molecular Haematology Unit On 7 Feb 2011, at 19:03, Liisa Koski wrote: Hi, I have just installed Galaxy and am trying to configure it to allow display of data on my local installation of GBrowse. I have edited tool-data/shared/gbrowse/gbrowse_build_sites.txt (species http://domain.ca/cgi-bin/gbrowse/species species) As well as universe_wsgi.ini (gbrowse_display_sites = species) However I do not see a link in history items after I stop and start the server. Is there something else I'm missing? Thanks in advance for your help, Liisa<ATT00001.txt>
_______________________________________________ To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
