Hi,
since making the last update I have found some new warnings in my
paster.log, it also seems as though the galaxy process starts to
gather memory and eventually hang (35% of 64G memory).
I've posted the entries below.
If anyone could help me understand what is going on that would be great.
Thanks.
Shaun Webb
paste.httpserver.ThreadPool INFO 2011-03-09 09:49:49,962 No idle
tasks, and only 0 busy tasks; adding 5 more workers
paste.httpserver.ThreadPool INFO 2011-03-09 09:49:58,754 No idle
tasks, and only 4 busy tasks; adding 1 more workers
paste.httpserver.ThreadPool INFO 2011-03-09 09:51:47,301 Culling 6
extra workers (5 idle workers present)
paste.httpserver.ThreadPool INFO 2011-03-09 09:55:17,163 No idle
tasks, and only 0 busy tasks; adding 5 more workers
129.215.14.72 - - [09/Mar/2011:09:48:40 +0100] "GET /history HTTP/1.1"
500 - "http://bifx-core.bio.ed.ac.uk:8080/"; "Mozilla/5.0 (Windows; U;
Windows NT 5.1; en-GB; rv:1.9.2.13) Gecko/20101203 Firefox/3.6.13
(.NET CLR 2.0.50727; .NET CLR 1.1.4322; .NET CLR 3.0.4506.2152; .NET
CLR 3.5.30729)"
paste.httpserver.ThreadPool INFO 2011-03-09 10:13:16,956 Culling 5
extra workers (7 idle workers present)
212.183.140.59 - - [09/Mar/2011:10:13:17 +0100] "GET / HTTP/1.1" 200 -
"-" "Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10_6_6; en-US)
AppleWebKit/534.13 (KHTML, like Gecko) Chrome/9.0.597.102 Safari/534.13"
paste.httpserver.ThreadPool INFO 2011-03-09 10:14:35,715 No idle
tasks, and only 2 busy tasks; adding 3 more workers
paste.httpserver.ThreadPool WARNING 2011-03-09 10:15:15,104 Thread
140283224094464 hung (working on task for 3096 seconds)
----------------------------------------
Exception happened during processing of request from ('212.183.140.59', 10871)
Traceback (most recent call last):
File "/usr/lib/python2.6/SocketServer.py", line 281, in
_handle_request_noblock
self.process_request(request, client_address)
File
"/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py", line 1037, in
process_request
lambda: self.process_request_in_thread(request, client_address))
File
"/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py", line 617, in
add_task
self.kill_hung_threads()
File
"/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py", line 778, in
kill_hung_threads
self.kill_worker(worker.thread_id)
File
"/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py", line 705, in
kill_worker
killthread.async_raise(thread_id, SystemExit)
File
"/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/util/killthread.py", line 22, in
async_raise
raise ValueError("invalid thread id")
ValueError: invalid thread id
----------------------------------------
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