On Thu, Apr 14, 2011 at 3:17 PM, Peter Cock <p.j.a.c...@googlemail.com>wrote:
> On Thu, Apr 14, 2011 at 2:08 PM, Leandro Hermida > <soft...@leandrohermida.com> wrote: > > Hi, > > > > I have a tool with a <code file="my_script.py"/> tag and in that code > file > > I'm trying to get the tool dirpath where that script and the tool XML > > exist. I've tried: > > > > os.path.abspath(os.path.dirname(sys.argv[0])) > > os.path.abspath(os.path.dirname(__file__)) > > > > And both don't work as expected. Is there a galaxy class I could import > > which will have the tool directory path? > > > > regards, > > Leandro > > For standard Python tools in Galaxy, I'm using > os.path.split(sys.argv[0])[0] > to get the path, which on reflection probably should be written as > os.path.dirname(sys.argv[0]) as you suggest. > > What do __file__ and sys.argv[0] give you? The simplest way to debug > this is to add a print statement, since Galaxy will show the stdout. > > Hi Peter, __file__ throws an error: global name '__file__' is not defined os.path.abspath(os.path.dirname(sys.argv[0])) gives me /path/to/galaxy/scripts directory which is two levels up from what the tool directory I want for example /path/to/galaxy/tools/mytool Isn't there some Galaxy class I can import? I remember seeing in other code files "import galaxy" and would this have somewhere in it the current tool directory? -Leandro
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