Hi Greg,

Regarding the tools contained in fml_gff_converter_programs.tar.bz2, the
> following xml files are not well formed due to the malformed "<! -- TODO
> EDIT HERE >" tag:
>
> fml_gff_converter_programs/galaxy/bed_to_gff3.xml
> fml_gff_converter_programs/galaxy/gff3_to_bed.xml
> fml_gff_converter_programs/galaxy/gff3_to_gtf.xml
> fml_gff_converter_programs/galaxy/gtf_to_gff3.xml
>
> In addition, none of these files include the required "version" attribute
> in the <tool> tag.
>

Many thanks for pointing me the version number issue with tool configuration
file. I forgot the same.


> The same goes for the files in ~/gff_groomer/fml_gff_groomer/galaxy - they
> are not well-formed due to the same <! -- TODO EDIT HERE > tag, and they do
> not include the "version" attribute int the <tool> tag.  Tools tags should
> look something like this:
>
> <tool id="fml_bed2gff" name="BED_to_GFF3" version="1.0.0">
>
> I've made some enhancements to the tool shed code that will display errors
> like this ( rather than resulting in the current server error ), so the next
> time I update the tool shed ( within the next couple of days ), this problem
> will be corrected.
>
> In the meantime, if you make the above corrections, you should have no
> problems uploading your tools to the tool shed.
>
> Thanks very much for pointing out these issues, and for taking the time to
> contribute your tools to the Galaxy community.
>
>
Yes I did the changes accordingly and now it uploaded into the Tool shed.
Thanks for your quick fix.

regards, Vipin
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to