Hi Johannes, Johannes Eichner wrote: > Dear Galaxy Team, > > I just updated my local instance of galaxy, and now I have a problem > with the "DRMAA_python" egg, which makes it impossible to run jobs on > our SGE cluster. I get the following error message after executing "run.sh":
... > gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall > -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector > --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic > -fasynchronous-unwind\ > -tables -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/opt/sge-6.1/include > -I/usr/include/python2.6 -c cDRMAA_wrap.c -o > build/temp.linux-i686-2.6/cDRMAA_wrap.o -Wno-unused > cDRMAA_wrap.c:13:20: error: Python.h: No such file or directory It looks like you need to install the python-dev package, then compilation should succeed. --nate > cDRMAA_wrap.c:358: error: expected specifier-qualifier-list before > ‘PyObject’ > cDRMAA_wrap.c:364: error: expected specifier-qualifier-list before > ‘PyObject_HEAD’ > ... > error: command 'gcc' failed with exit status 1 > Traceback (most recent call last): > File "scripts/scramble.py", line 44, in <module> > egg.scramble() > File "/rahome/webservices/galaxy_test/lib/galaxy/eggs/scramble.py", > line 57, in scramble > self.run_scramble_script() > File "/rahome/webservices/galaxy_test/lib/galaxy/eggs/scramble.py", > line 206, in run_scramble_script > raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( > sys._getframe().f_code.co_name, self.name, self.version ) ) > galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build > failed for DRMAA_python 0.2 > > ____________________ > > > I would very much appreciate your help in fixing this problem. > > Kind regards, > Johannes > > -- > Dipl.-Inf. (Bioinf.) Johannes Eichner > Univ. Tuebingen, WSI-RA, Sand 1, D-72076 Tuebingen, Germany > Phone: (+49/0) 7071 / 29 70436 Fax: (+49/0) 7071 / 29 5091 > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
