I'm having trouble getting some of the tools to work on my local installation
of Galaxy on a Mac (OS X version 10.6.7). The instructions on the GetGalaxy
wiki are clear, and I was able to download and install from the anonymous
Mercurial repository. Galaxy starts up and runs just fine for tools like "Get
Data", "FASTQ Groomer", and "FASTQ Summary Statistics".
The problems started when I try to run Graph/Data Display -> Boxplot (GnuPlot).
I get the error:
"An error occurred running this job:/bin/sh: gnuplot: command not found
Error running gnuplot."
The FASTX Barcode Splitter also gives me an error:
"An error occurred running this
line 65: fastx_barcode_splitter.pl: command not found
zcat: /Users/Me/galaxy-dist/database/files/000/dataset_10.dat.Z: No such file
sed: illegal opt"
I'm assuming these are Tool Dependency problems, although I have tried to
install the OS X versions of GnuPlot and the FASTX Toolkit and still get
Are there any suggestions from users who are successfully running Galaxy on OS
Thanks in advance,
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