On Thu, Jun 2, 2011 at 6:29 PM, Nate Coraor <n...@bx.psu.edu> wrote:
> Peter Cock wrote:
>> Hi all,
>> Something I've not needed to do until now is define a new file format
>> in Galaxy. I understand the basic principle and defining a subclass in
>> Python... however, how does this work with new tools on the Tool Shed?
>> In particular, if an output format is likely to be used by more than
>> one tool, can we get it added to the Galaxy core?
> I think people have provided the new subclass as a patch with the tool,
> but probably many of them, if well written, could be added to the core.

I think that should be encouraged, especially if you want to make
tool installation as automatic as possible (patching Galaxy to add
a new format is non-trivial).

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