Hi again, Sorry to ping again about this, just very interested in knowing if this is a missing feature in Galaxy or if I had configured something wrong.
Is it possible in Galaxy to have a tool with a multiple="true" input dataset parameter? It doesn't seem so? best, Leandro On Tue, May 24, 2011 at 1:31 PM, Leandro Hermida <soft...@leandrohermida.com> wrote: > Hi Nate, > > Thanks for the ping, have fun at the conference! > On Tue, May 24, 2011 at 11:22 AM, Nate Coraor <n...@bx.psu.edu> wrote: >> >> Hi Leandro, >> >> The Galaxy Team has recently been preparing for and traveling in advance >> of the Galaxy Community Conference, which begins today. Unfortunately I >> don't have an answer for you, but when we're all back at work next week, >> someone should be able to respond. >> >> Thanks, >> --nate >> >> Leandro Hermida wrote: >> > Hi again, >> > >> > Very sorry to ask again, just gotten no repsonse, but is this a Galaxy >> > bug >> > or does anyone have a functioning tool that takes multiple datasets as >> > an >> > input parameter??? i.e. >> > >> > <param type="data" multiple="true" ... /> >> > >> > regards, >> > Leandro >> > >> > On Thu, May 19, 2011 at 7:15 PM, Leandro Hermida >> > <soft...@leandrohermida.com >> > > wrote: >> > >> > > Hi again, >> > > >> > > I tried changing the format to txt and tabular which I have other >> > > datasets >> > > in my history and still the same error and stack trace in Galaxy. >> > > >> > > Is it possible at all to have a select multiple of datasets as an >> > > input >> > > parameter?? >> > > >> > > best, >> > > Leandro >> > > >> > > >> > > On Thu, May 19, 2011 at 6:59 PM, Leandro Hermida < >> > > soft...@leandrohermida.com> wrote: >> > > >> > >> Hi Galaxy developers, >> > >> >> > >> Something seems maybe to be wrong with the format="html" type... I >> > >> forgot >> > >> to add before that my tool input param the format="html" attribute: >> > >> >> > >> <param type="data" multiple="true" format="html" name="input1" /> >> > >> >> > >> In another tool I have it outputs format="html" and this works and >> > >> displays in Galaxy just fine. I would like to use multiple of these >> > >> output >> > >> datasets in my history as the input for this other tool but something >> > >> seems >> > >> to be wrong if you try to do this? >> > >> >> > >> a bit lost, >> > >> Leandro >> > >> >> > >> >> > >> On Thu, May 19, 2011 at 3:30 PM, Leandro Hermida < >> > >> soft...@leandrohermida.com> wrote: >> > >> >> > >>> Hi, >> > >>> >> > >>> I have a tool where the input is multi-select of datasets, e.g.: >> > >>> >> > >>> <param type="data" multiple="true" name="input1" /> >> > >>> >> > >>> I tested it to see what it would pass to my command and I get the >> > >>> following debug page and error in Galaxy: >> > >>> >> > >>> AttributeError: 'list' object has no attribute 'missing_meta' >> > >>> >> > >>> The last part of the stack trace looks like: >> > >>> >> > >>> >> validator.validate( value, history ) >> > >>> Module galaxy.tools.parameters.validation:185 in validate >> > >>> >> > >>> history <galaxy.model.History object at 0xb8ea190> >> > >>> self <galaxy.tools.parameters.validation.MetadataValidator >> > >>> object >> > >>> at 0xb8e6250> >> > >>> value [<galaxy.model.HistoryDatasetAssociation object at 0xa255550>, >> > >>> <galaxy.model.HistoryDataset ... Association object at 0xb8ea210>] >> > >>> >> > >>> >> if value and value.missing_meta( check = self.check, skip = >> > >>> >> self.skip >> > >>> ): >> > >>> AttributeError: 'list' object has no attribute 'missing_meta' >> > >>> >> > >>> What am I doing wrong? >> > >>> >> > >>> regards, >> > >>> Leandro >> > >>> >> > >>> >> > >> >> > > >> >> > ___________________________________________________________ >> > Please keep all replies on the list by using "reply all" >> > in your mail client. To manage your subscriptions to this >> > and other Galaxy lists, please use the interface at: >> > >> > http://lists.bx.psu.edu/ >> > > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
