On 06/28/2011 01:50 PM, colin molter wrote:
hi,

no, i found that just later and that solved the problem. i wanted to cancel
my question .. but too late.
anyway i managed to put my 35Gb fastq files on galaxy and i am transforming
it whith the fastq groomer.

any idea about the other problem (upload using url)? which stopped at 155Mb
with no error?

No, I just guess it is a browser issue, hence for big files, upload via ftp is recommended, see:

https://bitbucket.org/galaxy/galaxy-central/wiki/UploadViaFTP


Hans


thx again
colin

2011/6/28 Hans-Rudolf Hotz<h...@fmi.ch>

Hi Colin

In your 'universe_wsgi.ini' file, have you changed the line:

"library_import_dir = None"

to the directory with your data?


Regards, Hans




On 06/28/2011 11:38 AM, colin wrote:

Hi,
i all, my first post in the mailing list. I started one moth ago galaxy
(at the conference) and the tool is really impressive. thx for it.
I installed a local version of galaxy (http://ampere.ulb.ac.be), but i am
having some trouble when uploading private data on it.

Here is the procedure i followed:
1/ I got sra samples from ncbi:
http://trace.ncbi.nlm.nih.gov/**Traces/sra/?study=ERP000546<http://trace.ncbi.nlm.nih.gov/Traces/sra/?study=ERP000546>

2/ i transformed these sra in fastq format using the sratoolkit
https://bitbucket.org/galaxy/**galaxy-central/wiki/**
DataLibraries/UploadingFiles<https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFiles>
-->   this provides me fastq files of 25Gb

3/ PROBLEMS:
a/ IF I try to upload the data set using an URL in upload file
(I created a controller here: http://insilico.ulb.ac.be/**
publicutilities/sendonthefly?**url=/fs1-ampere/GenomicsData/**
ERP000546/ERR030856.fastq<http://insilico.ulb.ac.be/publicutilities/sendonthefly?url=/fs1-ampere/GenomicsData/ERP000546/ERR030856.fastq>
)
then only 155Mb are uploaded to galaxy (and no error)

b/ if i try to follow that method: https://bitbucket.org/galaxy/**
galaxy-central/wiki/**DataLibraries/UploadingFiles<https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFiles>
and i try to get data from the server, the menu "upload files from
filesystem paths" and "upload directory of files" are not present.
==>   no way to access these files locally


any hints for that?

thx
Colin



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